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  1. Bug Repository
  2. BUG-94

NPE when refreshing BAM track - ID: 3237699

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      This seems to happen reliably following these steps:

      • Zoom in to some gene
      • Load a BAM and set to Auto Load
      • Load another BAM, leave to Refresh Data
      • Click Refresh Data

      This appears:
      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at com.affymetrix.igb.view.load.GeneralLoadUtils.checkBamLoading(General
      LoadUtils.java:760)
      at com.affymetrix.igb.view.load.GeneralLoadUtils.loadAndDisplaySpan(Gene
      ralLoadUtils.java:671)
      at com.affymetrix.igb.view.load.GeneralLoadUtils.loadAndDisplayAnnotatio
      ns(GeneralLoadUtils.java:650)
      at com.affymetrix.igb.view.load.GeneralLoadView.loadFeatures(GeneralLoad
      View.java:621)
      at com.affymetrix.igb.view.load.GeneralLoadView.loadVisibleFeatures(Gene
      ralLoadView.java:589)
      at com.affymetrix.igb.action.RefreshDataAction.actionPerformed(RefreshDa
      taAction.java:32)

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              • Assignee:
                Unassigned
                Reporter:
                michafla Michael Lawrence (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: