Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Fixed
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Labels:None
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Environment:
IGB 6.5
Description
Some of the Hughes lab genomes on their QL site don't have the required files, e.g.,
[java] WARNING: URL http://hugheslab.ccbr.utoronto.ca/igb/M_smegmatis_mc2-155_March_2008/mod_chromInfo.txt is not reachable, and is not cached!
[java] Apr 14, 2011 6:33:33 PM com.affymetrix.genometryImpl.quickload.QuickLoadServerModel getInputStream
[java] FINE: Load URL: http://hugheslab.ccbr.utoronto.ca/igb/M_smegmatis_mc2-155_March_2008/mod_chromInfo.txt
IGB should alert the user when a QL site can't be used because it is missing critical files.
Currently, it gives no warning - it just shows nothing when the site's contents.txt file is missing.
IGB should instead open a dialog that says:
"Warning: QuickLoad Data Source [NAME] does not contain required contents.txt file for requested genome version [GENOME VERSION]."
where NAME is the name being shown in the Data Sources and Data Sets table.
Attachments
Issue Links
- is blocked by
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BUG-647 Server bugs
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- Closed
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Activity
| Assignee | Ann Loraine [ aloraine ] | Hiral Vora [ hiralv ] |
| Description |
Some of the Hughes lab genomes on their QL site don't have the required files, e.g., [java] WARNING: URL http://hugheslab.ccbr.utoronto.ca/igb/M_smegmatis_mc2-155_March_2008/mod_chromInfo.txt is not reachable, and is not cached! [java] Apr 14, 2011 6:33:33 PM com.affymetrix.genometryImpl.quickload.QuickLoadServerModel getInputStream [java] FINE: Load URL: http://hugheslab.ccbr.utoronto.ca/igb/M_smegmatis_mc2-155_March_2008/mod_chromInfo.txt IGB should alert the user when a QL site can't be used because it is missing critical files. Currently, it gives no warning - it just shows nothing when the site's contents.txt file is missing. IGB should instead open a dialog that says: "Warning: QuickLoad Data Source [Fill in blank] does not contain required contents.txt file for requested genome version [fill in blank.]" |
Some of the Hughes lab genomes on their QL site don't have the required files, e.g., [java] WARNING: URL http://hugheslab.ccbr.utoronto.ca/igb/M_smegmatis_mc2-155_March_2008/mod_chromInfo.txt is not reachable, and is not cached! [java] Apr 14, 2011 6:33:33 PM com.affymetrix.genometryImpl.quickload.QuickLoadServerModel getInputStream [java] FINE: Load URL: http://hugheslab.ccbr.utoronto.ca/igb/M_smegmatis_mc2-155_March_2008/mod_chromInfo.txt IGB should alert the user when a QL site can't be used because it is missing critical files. Currently, it gives no warning - it just shows nothing when the site's contents.txt file is missing. IGB should instead open a dialog that says: "Warning: QuickLoad Data Source [NAME] does not contain required contents.txt file for requested genome version [GENOME VERSION]." where NAME is the name being shown in the Data Sources and Data Sets table. |
| Assignee | Hiral Vora [ hiralv ] | Ann Loraine [ aloraine ] |
| Assignee | Ann Loraine [ aloraine ] | Hiral Vora [ hiralv ] |
| Assignee | Hiral Vora [ hiralv ] | Alyssa Gulledge [ alyssa ] |
| Status | Open [ 1 ] | Resolved [ 5 ] |
| Resolution | Fixed [ 1 ] |
| Status | Resolved [ 5 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Assignee | Alyssa Gulledge [ alyssa ] |
| Status | Reopened [ 4 ] | Resolved [ 5 ] |
| Resolution | Fixed [ 1 ] |
| Status | Resolved [ 5 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Assignee | Katharine Kubiak [ kkubiak ] |
| Assignee | Katharine Kubiak [ kkubiak ] | Anuj Puram [ anuj ] |
| Assignee | Anuj Puram [ anuj ] | Alyssa Gulledge [ alyssa ] |
| Status | Reopened [ 4 ] | Resolved [ 5 ] |
| Assignee | Alyssa Gulledge [ alyssa ] | |
| Resolution | Fixed [ 1 ] |
| Status | Resolved [ 5 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Status | Reopened [ 4 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] |