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  1. Bug Repository
  2. BUG-99

Hughes lab server missing data files, chokes IGB

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None
    • Environment:

      IGB 6.5

      Description

      Some of the Hughes lab genomes on their QL site don't have the required files, e.g.,

      [java] WARNING: URL http://hugheslab.ccbr.utoronto.ca/igb/M_smegmatis_mc2-155_March_2008/mod_chromInfo.txt is not reachable, and is not cached!
      [java] Apr 14, 2011 6:33:33 PM com.affymetrix.genometryImpl.quickload.QuickLoadServerModel getInputStream
      [java] FINE: Load URL: http://hugheslab.ccbr.utoronto.ca/igb/M_smegmatis_mc2-155_March_2008/mod_chromInfo.txt

      IGB should alert the user when a QL site can't be used because it is missing critical files.

      Currently, it gives no warning - it just shows nothing when the site's contents.txt file is missing.

      IGB should instead open a dialog that says:

      "Warning: QuickLoad Data Source [NAME] does not contain required contents.txt file for requested genome version [GENOME VERSION]."

      where NAME is the name being shown in the Data Sources and Data Sets table.

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              • Assignee:
                Unassigned
                Reporter:
                ann.loraine Ann Loraine
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                • Created:
                  Updated:
                  Resolved: