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  1. Deep Backlog
  2. DB-146

Incorrect parsing of multiline GFF3 files

          Details

          • Type: Bug
          • Status: Open (View Workflow)
          • Priority: Major
          • Resolution: Unresolved
          • Labels:
            None

            Description

            A user had an issue with a .gff3 file not showing up correctly in IGB (https://jira.transvar.org/browse/HELP-101). The issue appears to stem from IGB incorrectly parsing multiline .gff3 files. For example, compare how IGB loads the attached .bed and .gff3, both generated from the same data and following the accepted formats. In the .gff3 file, only the first line of a gene is displayed, while the rest are ignored.

              Attachments

              1. closeup of gff3 parents.PNG
                closeup of gff3 parents.PNG
                73 kB
              2. Parent GlyphsShown.PNG
                Parent GlyphsShown.PNG
                80 kB
              3. Sample.bed
                1 kB
              4. Sample.gff3
                4 kB

                Activity

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated: