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  1. User Support
  2. HELP-72

Users want to know a simple way to use the most recent Drosophila melanogaster genome

          Details

          • Type: Support
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Done
          • Labels:
            None
          • Sprint:
            Sprint 4, Sprint 5

            Description

            From: "Dingwall, Andrew" <Adingwall@luc.edu>
            Date: Mon, 23 Jun 2014 16:47:34 +0000
            To: Ann Loraine <aloraine@uncc.edu>
            Subject: current genome annotations

            Hi Ann,

            The IGB version I have been using defaults to the Drosophila melanogaster genome annotation dated 2006. There is a current annotation that is more recent, though I don’t know how to used that one. (The current release of FlyBase (FB2014_03) contains annotation release version 5.57 of D. melanogaster, which will be the last version of the 5.x assembly. Starting with FB2014_04, Flybase is migrating to release 6 of the BDGP assembly).

            Is there a simple way to display our ChIP-seq and RNA-seq data on the current genome annotation?

            Thanks…

            Andrew

            Andrew K. Dingwall, PhD
            Loyola University Chicago, Health Sciences Division
            Stritch School of Medicine
            Oncology Research Institute/Gene Regulation and Epigenetics Program
            Departments of Pathology and Microbiology & Immunology
            2160 S. First Avenue, Cancer Center-334
            Maywood, IL 60153
            (708) 327-3141; fax (708) 327-3342
            Website: http://dingwall-lab.weebly.com/

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                is duplicated by

                Support - HELP-80 User Support: User requests D. melanogaster (release 6) genome

                • Major - Major loss of function.
                • Closed

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                  mason Mason Meyer (Inactive) created issue -
                  mason Mason Meyer (Inactive) made changes -
                  Field Original Value New Value
                  Summary User wants to know a simple way to display ChIP/RNA-seq data on the most recent Drosophila melanogaster genome Users wants to know a simple way to display ChIP/RNA-seq data on the most recent Drosophila melanogaster genome
                  mason Mason Meyer (Inactive) made changes -
                  Summary Users wants to know a simple way to display ChIP/RNA-seq data on the most recent Drosophila melanogaster genome Users want to know a simple way to display ChIP/RNA-seq data on the most recent Drosophila melanogaster genome
                  mason Mason Meyer (Inactive) made changes -
                  Summary Users want to know a simple way to display ChIP/RNA-seq data on the most recent Drosophila melanogaster genome Users want to know a simple way to use the most recent Drosophila melanogaster genome
                  dcnorris David Norris (Inactive) made changes -
                  Sprint Sprint 3 [ 6 ]
                  dcnorris David Norris (Inactive) made changes -
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                  dcnorris David Norris (Inactive) made changes -
                  Assignee David Norris [ dcnorris ] Ann Loraine [ aloraine ]
                  ann.loraine Ann Loraine made changes -
                  Sprint Sprint 3 [ 6 ]
                  ann.loraine Ann Loraine made changes -
                  Sprint Sprint 4 [ 9 ]
                  ann.loraine Ann Loraine made changes -
                  Rank Ranked higher
                  dcnorris David Norris (Inactive) made changes -
                  Sprint Sprint 4 [ 9 ] Sprint 4, Sprint 5 [ 9, 10 ]
                  dcnorris David Norris (Inactive) made changes -
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                  dcnorris David Norris (Inactive) made changes -
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                  mason Mason Meyer (Inactive) made changes -
                  Project IGB 8.2 [ 10840 ] User Support [ 10740 ]
                  Key IGBF-162 HELP-72
                  Workflow Loraine Lab Workflow [ 14792 ] classic default workflow [ 15428 ]
                  mason Mason Meyer (Inactive) made changes -
                  Link This issue is duplicated by HELP-80 [ HELP-80 ]
                  jeckstein John Eckstein (Inactive) made changes -
                  Workflow classic default workflow [ 15428 ] Loraine Lab Workflow [ 16393 ]
                  jeckstein John Eckstein (Inactive) made changes -
                  Resolution Done [ 10000 ]
                  Status Open [ 1 ] Closed [ 6 ]
                  ann.loraine Ann Loraine made changes -
                  Workflow Loraine Lab Workflow [ 16393 ] Fall 2019 Workflow Update [ 20531 ]
                  ann.loraine Ann Loraine made changes -
                  Workflow Fall 2019 Workflow Update [ 20531 ] Revised Fall 2019 Workflow Update [ 22734 ]

                    People

                    • Assignee:
                      ann.loraine Ann Loraine
                      Reporter:
                      mason Mason Meyer (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: