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  1. IGB 6.7
  2. IGBB-270

BAM and EST summary tracks show overlapping characters at the top

    Details

    • Type: Improvement
    • Status: Resolved (View Workflow)
    • Priority: Minor
    • Resolution: Won't Fix
    • Labels:
      None

      Description

      Windows v9963

      Load a bam file. Open Pref -> Tracks: set max adj to 10 and then set label field to any type. The very top line/summary is a blur of characters.

      Is it possible to turn off the label on summary lines?

        Attachments

          Activity

          kkubiak Katharine Kubiak (Inactive) created issue -
          kkubiak Katharine Kubiak (Inactive) made changes -
          Field Original Value New Value
          Description Windows v9963

          A_thaliana_Jun_2009
          Activate RNA-Seq > 'Sample BAM file' only
          Zoom in all the way
          Load data
          Move to a location to view data from track
          Pref -> Tracks
          Highlight BAM track
          Change label field to 'type' and notice very top line is a blur of characters
          Try several different label fields and notice similar error. Some are overlapping characters and others are just a blur of the FG color

          Same issue with EST(multiple map):
          A_thaliana_Jun_2009
          Activate Bioviz > 'EST(multiple map) only
          chr1 : 50,542 - 50,593
          Load data
          Pref -> Tracks
          Highlight EST track
          Change label field and notice similar issue with the very top line
          Looks blurry no matter the zoom or maximizing IGB's window
          Windows v9963

          A_thaliana_Jun_2009
          Activate RNA-Seq > 'Sample BAM file' only
          chr1 : 979,520 - 979,572
          Load data
          Pref -> Tracks
          Highlight BAM track
          Change label field to 'type' and notice very top line is a blur of characters
          Try several different label fields and notice similar error. Some are overlapping characters and others are just a blur of the FG color

          Same issue with EST(multiple map):
          A_thaliana_Jun_2009
          Activate Bioviz > 'EST(multiple map) only
          chr1 : 50,542 - 50,593
          Load data
          Pref -> Tracks
          Highlight EST track
          Change label field and notice similar issue with the very top line

          Looks blurry no matter the zoom or maximizing IGB's window
          kkubiak Katharine Kubiak (Inactive) made changes -
          Assignee Alyssa Gulledge [ alyssa ]
          alyssa Alyssa Gulledge (Inactive) made changes -
          Issue Type Bug [ 1 ] Improvement [ 4 ]
          Priority Major [ 3 ] Trivial [ 5 ]
          alyssa Alyssa Gulledge (Inactive) made changes -
          Summary BAM and EST track shows a blurry overlapping of characters at the top when zoomed in BAM and EST summary tracks show overlapping characters at the top
          Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
          Priority Trivial [ 5 ] Minor [ 4 ]
          Description Windows v9963

          A_thaliana_Jun_2009
          Activate RNA-Seq > 'Sample BAM file' only
          chr1 : 979,520 - 979,572
          Load data
          Pref -> Tracks
          Highlight BAM track
          Change label field to 'type' and notice very top line is a blur of characters
          Try several different label fields and notice similar error. Some are overlapping characters and others are just a blur of the FG color

          Same issue with EST(multiple map):
          A_thaliana_Jun_2009
          Activate Bioviz > 'EST(multiple map) only
          chr1 : 50,542 - 50,593
          Load data
          Pref -> Tracks
          Highlight EST track
          Change label field and notice similar issue with the very top line

          Looks blurry no matter the zoom or maximizing IGB's window
          Windows v9963

          Load a bam file. Open Pref -> Tracks: set max adj to 10 and then set label field to any type. The very top line/summary is a blur of characters.

          Is it possible to turn off the label on summary lines?
          alyssa Alyssa Gulledge (Inactive) made changes -
          Comment [ The text of the sequence seems to be the black letter with a lighter highlight or halo around it making it harder to read. Can we just get it as a solid color? ]
          hiralv Hiral Vora (Inactive) made changes -
          Status Open [ 1 ] Resolved [ 5 ]
          Assignee Hiral Vora [ hiralv ]
          Resolution Won't Fix [ 2 ]

            People

            • Assignee:
              Unassigned
              Reporter:
              kkubiak Katharine Kubiak (Inactive)
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              Dates

              • Created:
                Updated:
                Resolved: