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  1. IGB 7.0
  2. IGBC-414

Activating Semantic Zoom view mode throws exception

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      Windows v12267

      A_thal_2009
      Click TAIR 10 mRNA track label
      Track Adjuster > View Mode > Semantic Zoom

      Exception thrown:

      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at com.affymetrix.igb.viewmode.AnnotationGlyph.pack(AnnotationGlyph.java:194)
      at com.affymetrix.igb.shared.TierGlyph.pack(TierGlyph.java:425)
      at com.affymetrix.igb.tiers.AffyTieredMap.packTiers(AffyTieredMap.java:187)
      at com.affymetrix.igb.tiers.AffyTieredMap.packTiers(AffyTieredMap.java:178)
      at com.affymetrix.igb.tiers.AffyLabelledTierMap.packTiers(AffyLabelledTierMap.java:167)
      at com.affymetrix.igb.view.SeqMapView$6$1.actionPerformed(SeqMapView.java:1274)
      at com.affymetrix.igb.view.SeqMapView.preserveSelectionAndPerformAction(SeqMapView.java:954)
      at com.affymetrix.igb.view.SeqMapView$6.run(SeqMapView.java:1279)
      at com.affymetrix.genometryImpl.util.ThreadUtils.runOnEventQueue(ThreadUtils.java:29)
      at com.affymetrix.igb.view.SeqMapView.addAnnotationTrackFor(SeqMapView.java:1264)
      at com.affymetrix.igb.view.TrackView.changeViewMode(TrackView.java:176)
      at com.affymetrix.igb.action.ChangeViewModeAction.changeViewMode(ChangeViewModeAction.java:57)
      at com.affymetrix.igb.action.ChangeViewModeAction.actionPerformed(ChangeViewModeAction.java:34)
      at com.affymetrix.igb.shared.TrackPreferencesA.viewModeComboBoxActionPerformedA(TrackPreferencesA.java:66)
      at com.affymetrix.igb.shared.TrackPreferencesGUI.viewModeComboBoxActionPerformed(TrackPreferencesGUI.java:664)
      at com.affymetrix.igb.shared.TrackPreferencesGUI.access$2500(TrackPreferencesGUI.java:29)
      at com.affymetrix.igb.shared.TrackPreferencesGUI$28.actionPerformed(TrackPreferencesGUI.java:568)
      at javax.swing.JComboBox.fireActionEvent(Unknown Source)
      at javax.swing.JComboBox.setSelectedItem(Unknown Source)
      at javax.swing.JComboBox.setSelectedIndex(Unknown Source)
      at javax.swing.plaf.basic.BasicComboPopup$Handler.mouseReleased(Unknown Source)
      at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source)
      at java.awt.Component.processMouseEvent(Unknown Source)
      at javax.swing.JComponent.processMouseEvent(Unknown Source)
      at javax.swing.plaf.basic.BasicComboPopup$1.processMouseEvent(Unknown Source)
      at java.awt.Component.processEvent(Unknown Source)
      at java.awt.Container.processEvent(Unknown Source)
      at java.awt.Component.dispatchEventImpl(Unknown Source)
      at java.awt.Container.dispatchEventImpl(Unknown Source)
      at java.awt.Component.dispatchEvent(Unknown Source)
      at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
      at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
      at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
      at java.awt.Container.dispatchEventImpl(Unknown Source)
      at java.awt.Window.dispatchEventImpl(Unknown Source)
      at java.awt.Component.dispatchEvent(Unknown Source)
      at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
      at java.awt.EventQueue.access$000(Unknown Source)
      at java.awt.EventQueue$1.run(Unknown Source)
      at java.awt.EventQueue$1.run(Unknown Source)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
      at java.awt.EventQueue$2.run(Unknown Source)
      at java.awt.EventQueue$2.run(Unknown Source)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
      at java.awt.EventQueue.dispatchEvent(Unknown Source)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.run(Unknown Source)

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            • Assignee:
              Unassigned
              Reporter:
              kkubiak Katharine Kubiak (Inactive)
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              Dates

              • Created:
                Updated:
                Resolved: