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  1. IGB 7.0
  2. IGBC-478

check that genome synonyms work in IGB links

          Details

          • Type: Task
          • Status: Reopened (View Workflow)
          • Priority: Major
          • Resolution: Unresolved
          • Labels:
            None
          • Environment:

            any IGB (6.7 or above)

            Description

            Create a page in the user's guide containing IGB region links in which the "version" parameter uses synonyms of genome versions and not the IGB convention. Restrict viewing so that only IGB collaborators and Loraine lab group members can see or edit the page.

            Eg., try "hg19" instead of H_sapiens_Feb_2009

            Do this with at least five different genomes listed in synonyms.txt which also have data sources available.

            If you see any bugs, report them.

            When you have made the page, make note of the URL in this comment.

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. IGBF-1262 Create release testing module for synonyms

                • Trivial - Cosmetic problem like misspelt words or misaligned text.
                • Closed

                  Activity

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                  ann.loraine Ann Loraine created issue -
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  https://wiki.transvar.org/confluence/display/igbman/Controlling+IGB+using+IGB+Links+with+Genome+Synonyms

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - https://wiki.transvar.org/confluence/display/igbman/Controlling+IGB+using+IGB+Links+with+Genome+Synonyms
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Field Original Value New Value
                  Project IGB 7.1 [ 10240 ] IGB 7.0 [ 10140 ]
                  Key IGBD-110 IGBC-478
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Katharine Kubiak [ kkubiak ] Ann Loraine [ aloraine ]
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                  ann.loraine Ann Loraine added a comment -

                  Seems to work fine.

                  Show
                  ann.loraine Ann Loraine added a comment - Seems to work fine.
                  ann.loraine Ann Loraine made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Resolution Won't Fix [ 2 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  Assignee Ann Loraine [ aloraine ]
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                  ann.loraine Ann Loraine added a comment -

                  Re-test with IGB 8.1 development branch.

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                  ann.loraine Ann Loraine added a comment - Re-test with IGB 8.1 development branch.
                  ann.loraine Ann Loraine made changes -
                  Resolution Won't Fix [ 2 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Kyle Suttlemyre [ kyle ]
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                  kyle Kyle Suttlemyre (Inactive) added a comment - - edited

                  IGB 8.1.7
                  First 3 Examples work
                  Example4: the chromosome in the link is incorrect chr1 instead of chI
                  Example5: None of the data in that species auto loads so it seems as if it does not work but if you select a data set then you will see that you have been taken to the correct location.

                  Show
                  kyle Kyle Suttlemyre (Inactive) added a comment - - edited IGB 8.1.7 First 3 Examples work Example4: the chromosome in the link is incorrect chr1 instead of chI Example5: None of the data in that species auto loads so it seems as if it does not work but if you select a data set then you will see that you have been taken to the correct location.
                  kyle Kyle Suttlemyre (Inactive) made changes -
                  Assignee Kyle Suttlemyre [ kyle ] David Norris [ dcnorris ]
                  ieclabau Ivory Blakley (Inactive) made changes -
                  Link This issue relates to IGBF-1262 [ IGBF-1262 ]

                    People

                    • Assignee:
                      dcnorris David Norris (Inactive)
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated: