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  1. IGB 7.0
  2. IGBC-946

don't show arrow marks when gene models are compressed

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            When users launch IGB and visit human genome for the first time, gene models are compressed (very short) resulting in the arrow marks appearing in exonic regions.

            To repeat:

            (1) reset prefs to default
            (2) start IGB
            (3) click Mona Lisa (to open human genome)
            (4) search for id NM_198714
            (5) observe multiple gene models w/ exons rectangles in which arrow marks are showing

            See attached image and session file.

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. IGBF-2865 Investigate glyphs representing introns in older versions of IGB

                • Major - Major loss of function.
                • Closed

                  Activity

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                  ann.loraine Ann Loraine created issue -
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Already fixed in r14035.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Already fixed in r14035.
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ] Ann Loraine [ aloraine ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Ann Loraine [ aloraine ] Alyssa Gulledge [ alyssa ]
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                  ann.loraine Ann Loraine added a comment -

                  I think the bug is back - please see second attached image.

                  The version of IGB is:

                  pi$ svn info
                  Path: .
                  URL: svn+ssh://loraine@svn.code.sf.net/p/genoviz/code/trunk
                  Repository Root: svn+ssh://loraine@svn.code.sf.net/p/genoviz/code
                  Repository UUID: 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
                  Revision: 14044
                  Node Kind: directory
                  Schedule: normal
                  Last Changed Author: hiralv
                  Last Changed Rev: 14044
                  Last Changed Date: 2013-01-17 16:43:41 -0500 (Thu, 17 Jan 2013)

                  Show
                  ann.loraine Ann Loraine added a comment - I think the bug is back - please see second attached image. The version of IGB is: pi$ svn info Path: . URL: svn+ssh://loraine@svn.code.sf.net/p/genoviz/code/trunk Repository Root: svn+ssh://loraine@svn.code.sf.net/p/genoviz/code Repository UUID: 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd Revision: 14044 Node Kind: directory Schedule: normal Last Changed Author: hiralv Last Changed Rev: 14044 Last Changed Date: 2013-01-17 16:43:41 -0500 (Thu, 17 Jan 2013)
                  ann.loraine Ann Loraine made changes -
                  Attachment genemodel-w-arrows-2.PNG [ 11857 ]
                  ann.loraine Ann Loraine made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
                  Hide
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14054.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14054.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Ann Loraine [ aloraine ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Ann Loraine [ aloraine ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  ann.loraine Ann Loraine made changes -
                  Link This issue relates to IGBF-2865 [ IGBF-2865 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: