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  1. IGB
  2. IGBF-1175

Check species.txt packaged with IGB to use correct genus for possum

        Details

        • Story Points:
          0.25
        • Sprint:
          Fall 2017

          Description

          The correct Latin name for possum is:
          Monodelphis domestica
          Check that the species.txt and synonyms.txt use the correct name for this species.

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              ann.loraine Ann Loraine created issue -
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Sprint Spring 2017 [ 47 ]
              Assignee Sanket Patil [ spatil26 ]
              djoshi4 Deepti Joshi (Inactive) made changes -
              Status Open [ 1 ] In Progress [ 3 ]
              djoshi4 Deepti Joshi (Inactive) made changes -
              Assignee Deepti Joshi [ djoshi4 ]
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              djoshi4 Deepti Joshi (Inactive) added a comment -

              Issue is ready for first level review.

              Link to the issue branch on bitbucket:
              https://bitbucket.org/djoshi4/deepti-fork-igb/branch/IGBF-1175-SynonymsIssue

              Comment on what to review:
              Species dropdown should show entry "Malus domestica Borkh". On selection, the Genome Version dropdown should show only "M_domestic_Borkh_Jun_2017". Also, Species dropdown should not have any entry about "Monodelphis domestica" or possum.

              Show
              djoshi4 Deepti Joshi (Inactive) added a comment - Issue is ready for first level review. Link to the issue branch on bitbucket: https://bitbucket.org/djoshi4/deepti-fork-igb/branch/IGBF-1175-SynonymsIssue Comment on what to review: Species dropdown should show entry "Malus domestica Borkh". On selection, the Genome Version dropdown should show only "M_domestic_Borkh_Jun_2017". Also, Species dropdown should not have any entry about "Monodelphis domestica" or possum.
              djoshi4 Deepti Joshi (Inactive) made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              djoshi4 Deepti Joshi (Inactive) made changes -
              Assignee Deepti Joshi [ djoshi4 ]
              sneha Sneha Ramesh Watharkar (Inactive) made changes -
              Comment [ If possum is being removed in a later issue does this issue still need to be pushed? ]
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              sneha Sneha Ramesh Watharkar (Inactive) added a comment - - edited

              1st first level review:

              Species: Malus domestica Borkh and Genome Version: M_domestic_Borkh_Jun_2017 display in the drop down menu and hover text works still. Genome loads when selected. Screen shot attached.

              Show
              sneha Sneha Ramesh Watharkar (Inactive) added a comment - - edited 1st first level review: Species: Malus domestica Borkh and Genome Version: M_domestic_Borkh_Jun_2017 display in the drop down menu and hover text works still. Genome loads when selected. Screen shot attached.
              sneha Sneha Ramesh Watharkar (Inactive) made changes -
              Attachment IGBF-1175.png [ 14026 ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing [ 10301 ] Ready for Pull Request [ 10304 ]
              djoshi4 Deepti Joshi (Inactive) made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ] Mason Meyer [ mason ]
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              mason Mason Meyer (Inactive) added a comment -

              My testing confirms that the species drop-down shows entry "Malus domestica Borkh" and on selection, the genome version drop-down shows "M_domestic_Borkh_Jun_2017" only. Also the species drop-down does not have a "Monodelphis domestica" or possum entry, as expected. Since this issue is resolved it will now be closed.

              Show
              mason Mason Meyer (Inactive) added a comment - My testing confirms that the species drop-down shows entry "Malus domestica Borkh" and on selection, the genome version drop-down shows "M_domestic_Borkh_Jun_2017" only. Also the species drop-down does not have a "Monodelphis domestica" or possum entry, as expected. Since this issue is resolved it will now be closed.
              mason Mason Meyer (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Needs Testing [ 10002 ] Closed [ 6 ]
              ieclabau Ivory Blakley (Inactive) made changes -
              Fix Version/s 9.0.1 Minor Release [ 10500 ]
              ann.loraine Ann Loraine made changes -
              Workflow Loraine Lab Workflow [ 17837 ] Fall 2019 Workflow Update [ 19808 ]
              ann.loraine Ann Loraine made changes -
              Workflow Fall 2019 Workflow Update [ 19808 ] Revised Fall 2019 Workflow Update [ 21927 ]

                People

                • Assignee:
                  mason Mason Meyer (Inactive)
                  Reporter:
                  ann.loraine Ann Loraine
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  4 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: