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  1. IGB
  2. IGBF-1189

Add S. Cerevisiae June 2008 genome to IGB Quickload - User request

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
    • Story Points:
      0.5
    • Sprint:
      Fall 2018 1, Fall 2018 Sprint 2, Fall 2018 Sprint 3

      Description

      A user from HELP-279 has contacted us about the June 2008 S. Cerevisiae genome missing from IGB Quickload.

      To aid in the task of adding this genome, I have attached the:

      1) 2bit reference genome, obtained here:
      http://hgdownload.soe.ucsc.edu/goldenPath/sacCer2/bigZips/

      2) Reference Annotations in BED format, obtained from the UCSC Table Browser using the "SGD Gene" track

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          Issue Links

            Activity

            mason Mason Meyer (Inactive) created issue -
            mason Mason Meyer (Inactive) made changes -
            Field Original Value New Value
            Link This issue relates to HELP-279 [ HELP-279 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Rank Ranked lower
            ann.loraine Ann Loraine made changes -
            Rank Ranked lower
            ann.loraine Ann Loraine made changes -
            Sprint Early Fall 2017 [ 47 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Summary Add S. Cerevisiae June 2008 genome to IGB Quickload Add S. Cerevisiae June 2008 genome to IGB Quickload - User request
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Labels Beginner
            ann.loraine Ann Loraine made changes -
            Story Points 0.25
            ann.loraine Ann Loraine made changes -
            Fix Version/s 9.0.2 Minor Release [ 10600 ]
            Story Points 0.25 0.5
            Labels Beginner Intermediate
            Assignee Ivory Blakley [ ieclabau ]
            ann.loraine Ann Loraine made changes -
            Sprint Fall 2018 1 [ 51 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked lower
            ieclabau Ivory Blakley (Inactive) made changes -
            Status Open [ 1 ] In Progress [ 3 ]
            ieclabau Ivory Blakley (Inactive) made changes -
            Assignee Ivory Blakley [ ieclabau ] Ann Loraine [ aloraine ]
            ieclabau Ivory Blakley (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing [ 10301 ] Open [ 1 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ] Ivory Blakley [ ieclabau ]
            ieclabau Ivory Blakley (Inactive) made changes -
            Status Open [ 1 ] In Progress [ 3 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Sprint Fall 2018 1 [ 51 ] Fall 2018 1, Fall 2018 Sprint 2 [ 51, 52 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ieclabau Ivory Blakley (Inactive) made changes -
            Assignee Ivory Blakley [ ieclabau ] Ann Loraine [ aloraine ]
            ieclabau Ivory Blakley (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Sprint Fall 2018 1, Fall 2018 Sprint 2 [ 51, 52 ] Fall 2018 1, Fall 2018 Sprint 2, Fall 2018 Sprint 3 [ 51, 52, 53 ]
            ann.loraine Ann Loraine made changes -
            Fix Version/s 9.0.2 Minor Release [ 10600 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing [ 10301 ] Needs Testing [ 10002 ]
            ann.loraine Ann Loraine made changes -
            Link This issue relates to IGBF-1414 [ IGBF-1414 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Status Needs Testing [ 10002 ] Needs Testing [ 10002 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Assignee Sneha Ramesh Watharkar [ jdaly ]
            ann.loraine Ann Loraine made changes -
            Assignee Sneha Ramesh Watharkar [ jdaly ] Pranav Sanjay Tambvekar [ ptambvek ]
            ptambvek Pranav Sanjay Tambvekar (Inactive) made changes -
            Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
            ptambvek Pranav Sanjay Tambvekar (Inactive) made changes -
            Resolution Done [ 10000 ]
            Status Testing In Progress [ 10003 ] Closed [ 6 ]
            ptambvek Pranav Sanjay Tambvekar (Inactive) made changes -
            Assignee Pranav Sanjay Tambvekar [ ptambvek ] Mason Meyer [ mason ]
            ann.loraine Ann Loraine made changes -
            Assignee Mason Meyer [ mason ] Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ] Ivory Blakley [ ieclabau ]
            ann.loraine Ann Loraine made changes -
            Workflow Loraine Lab Workflow [ 17855 ] Fall 2019 Workflow Update [ 19820 ]
            ann.loraine Ann Loraine made changes -
            Workflow Fall 2019 Workflow Update [ 19820 ] Revised Fall 2019 Workflow Update [ 21939 ]

              People

              • Assignee:
                ieclabau Ivory Blakley (Inactive)
                Reporter:
                mason Mason Meyer (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: