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  1. IGB
  2. IGBF-1189

Add S. Cerevisiae June 2008 genome to IGB Quickload - User request

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
        • Story Points:
          0.5
        • Sprint:
          Fall 2018 1, Fall 2018 Sprint 2, Fall 2018 Sprint 3

          Description

          A user from HELP-279 has contacted us about the June 2008 S. Cerevisiae genome missing from IGB Quickload.

          To aid in the task of adding this genome, I have attached the:

          1) 2bit reference genome, obtained here:
          http://hgdownload.soe.ucsc.edu/goldenPath/sacCer2/bigZips/

          2) Reference Annotations in BED format, obtained from the UCSC Table Browser using the "SGD Gene" track

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-1414 Check that 2008 yeast genome synonyms are in species.txt and synonyms.txt

              • Critical - Crashes, loss of data, severe memory leak.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. HELP-279 S. cerevisiae Jun_2008 reference genome not loading

              • Closed

                Activity

                Ascending order - Click to sort in descending order
                mason Mason Meyer (Inactive) created issue -
                mason Mason Meyer (Inactive) made changes -
                Field Original Value New Value
                Link This issue relates to HELP-279 [ HELP-279 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Rank Ranked lower
                ann.loraine Ann Loraine made changes -
                Rank Ranked lower
                ann.loraine Ann Loraine made changes -
                Sprint Early Fall 2017 [ 47 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Summary Add S. Cerevisiae June 2008 genome to IGB Quickload Add S. Cerevisiae June 2008 genome to IGB Quickload - User request
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Labels Beginner
                ann.loraine Ann Loraine made changes -
                Story Points 0.25
                ann.loraine Ann Loraine made changes -
                Fix Version/s 9.0.2 Minor Release [ 10600 ]
                Story Points 0.25 0.5
                Labels Beginner Intermediate
                Assignee Ivory Blakley [ ieclabau ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 2018 1 [ 51 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked lower
                ieclabau Ivory Blakley (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Assignee Ivory Blakley [ ieclabau ] Ann Loraine [ aloraine ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing [ 10301 ] Open [ 1 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Ivory Blakley [ ieclabau ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 2018 1 [ 51 ] Fall 2018 1, Fall 2018 Sprint 2 [ 51, 52 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ieclabau Ivory Blakley (Inactive) made changes -
                Assignee Ivory Blakley [ ieclabau ] Ann Loraine [ aloraine ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 2018 1, Fall 2018 Sprint 2 [ 51, 52 ] Fall 2018 1, Fall 2018 Sprint 2, Fall 2018 Sprint 3 [ 51, 52, 53 ]
                ann.loraine Ann Loraine made changes -
                Fix Version/s 9.0.2 Minor Release [ 10600 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing [ 10301 ] Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-1414 [ IGBF-1414 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Needs Testing [ 10002 ] Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Assignee Sneha Ramesh Watharkar [ jdaly ]
                ann.loraine Ann Loraine made changes -
                Assignee Sneha Ramesh Watharkar [ jdaly ] Pranav Sanjay Tambvekar [ ptambvek ]
                ptambvek Pranav Sanjay Tambvekar (Inactive) made changes -
                Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
                ptambvek Pranav Sanjay Tambvekar (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Testing In Progress [ 10003 ] Closed [ 6 ]
                ptambvek Pranav Sanjay Tambvekar (Inactive) made changes -
                Assignee Pranav Sanjay Tambvekar [ ptambvek ] Mason Meyer [ mason ]
                ann.loraine Ann Loraine made changes -
                Assignee Mason Meyer [ mason ] Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Ivory Blakley [ ieclabau ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 17855 ] Fall 2019 Workflow Update [ 19820 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 19820 ] Revised Fall 2019 Workflow Update [ 21939 ]

                  People

                  • Assignee:
                    ieclabau Ivory Blakley (Inactive)
                    Reporter:
                    mason Mason Meyer (Inactive)
                  • Votes:
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                    Dates

                    • Created:
                      Updated:
                      Resolved: