Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:0.5
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Sprint:Fall 2018 1, Fall 2018 Sprint 2, Fall 2018 Sprint 3
Description
A user from HELP-279 has contacted us about the June 2008 S. Cerevisiae genome missing from IGB Quickload.
To aid in the task of adding this genome, I have attached the:
1) 2bit reference genome, obtained here:
http://hgdownload.soe.ucsc.edu/goldenPath/sacCer2/bigZips/
2) Reference Annotations in BED format, obtained from the UCSC Table Browser using the "SGD Gene" track
Attachments
Issue Links
Activity
Rank | Ranked higher |
Rank | Ranked lower |
Rank | Ranked lower |
Sprint | Early Fall 2017 [ 47 ] |
Rank | Ranked higher |
Assignee | Ann Loraine [ aloraine ] |
Summary | Add S. Cerevisiae June 2008 genome to IGB Quickload | Add S. Cerevisiae June 2008 genome to IGB Quickload - User request |
Rank | Ranked higher |
Labels | Beginner |
Story Points | 0.25 |
Fix Version/s | 9.0.2 Minor Release [ 10600 ] | |
Story Points | 0.25 | 0.5 |
Labels | Beginner | Intermediate |
Assignee | Ivory Blakley [ ieclabau ] |
Sprint | Fall 2018 1 [ 51 ] |
Rank | Ranked lower |
Status | Open [ 1 ] | In Progress [ 3 ] |
Assignee | Ivory Blakley [ ieclabau ] | Ann Loraine [ aloraine ] |
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Status | Needs 1st Level Review [ 10005 ] | Reviewing [ 10301 ] |
Status | Reviewing [ 10301 ] | Open [ 1 ] |
Assignee | Ann Loraine [ aloraine ] | Ivory Blakley [ ieclabau ] |
Status | Open [ 1 ] | In Progress [ 3 ] |
Rank | Ranked higher |
Sprint | Fall 2018 1 [ 51 ] | Fall 2018 1, Fall 2018 Sprint 2 [ 51, 52 ] |
Rank | Ranked higher |
Assignee | Ivory Blakley [ ieclabau ] | Ann Loraine [ aloraine ] |
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Status | Needs 1st Level Review [ 10005 ] | Reviewing [ 10301 ] |
Rank | Ranked higher |
Sprint | Fall 2018 1, Fall 2018 Sprint 2 [ 51, 52 ] | Fall 2018 1, Fall 2018 Sprint 2, Fall 2018 Sprint 3 [ 51, 52, 53 ] |
Fix Version/s | 9.0.2 Minor Release [ 10600 ] |
Status | Reviewing [ 10301 ] | Needs Testing [ 10002 ] |
Assignee | Ann Loraine [ aloraine ] |
Status | Needs Testing [ 10002 ] | Needs Testing [ 10002 ] |
Rank | Ranked higher |
Assignee | Sneha Ramesh Watharkar [ jdaly ] |
Assignee | Sneha Ramesh Watharkar [ jdaly ] | Pranav Sanjay Tambvekar [ ptambvek ] |
Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
Resolution | Done [ 10000 ] | |
Status | Testing In Progress [ 10003 ] | Closed [ 6 ] |
Assignee | Pranav Sanjay Tambvekar [ ptambvek ] | Mason Meyer [ mason ] |
Assignee | Mason Meyer [ mason ] | Ann Loraine [ aloraine ] |
Assignee | Ann Loraine [ aloraine ] | Ivory Blakley [ ieclabau ] |
Workflow | Loraine Lab Workflow [ 17855 ] | Fall 2019 Workflow Update [ 19820 ] |
Workflow | Fall 2019 Workflow Update [ 19820 ] | Revised Fall 2019 Workflow Update [ 21939 ] |
Create and test Quickload containing just these data and notify Dr. Loraine when it is ready to deploy.
Ensure appropriate synonyms are added to synonyms.txt and species.txt bundled with IGB.