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  1. IGB
  2. IGBF-1195

Add soybean RNA-Seq quickload site to IGB

        Details

        • Story Points:
          0.25
        • Sprint:
          Fall 2017, B - Summer 2018

          Description

          Add this data source to IGB:

          http://igbquickload.org/soyseq

          with this mirror:

          http://lorainelab-quickload.scidas.org/soyseq/

          in igbDefaultPrefs.json

            Attachments

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1200 remove pollen and cyto QL sites and add http://lorainelab-quickload.scidas.org/rnaseq RNA-Seq QL site

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1206 Duplicate QL sites appear in new versions of IGB with changed default QL sites

              • Major - Major loss of function.
              • Closed

                Activity

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                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Status Open [ 1 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Description Add this data source to IGB:

                http://igbquickload.org/soyseq

                with this mirror:

                http://lorainelab-quickload.scidas.org/soyseq/                 		Add this data source to IGB:

                http://igbquickload.org/soyseq

                with this mirror:

                http://lorainelab-quickload.scidas.org/soyseq/

                in igbDefaultPrefs.json
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] Pull Request Submitted [ 10101 ]
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                To test:

                1) Visit latest soybean genome (Glycine max)
                2) Open data source named SoySeq

                Note: there is a bug that blocks editing of the data source even though the json is written to allow it:

                { "factoryName": "quickload", "name": "SoySeq", "url": "http://igbquickload.org/soyseq", "loadPriority": "4", "mirror": "http://lorainelab-quickload.scidas.org/soyseq", "isEditable": "true" }

                ,

                Show
                ann.loraine Ann Loraine added a comment - To test: 1) Visit latest soybean genome (Glycine max) 2) Open data source named SoySeq Note: there is a bug that blocks editing of the data source even though the json is written to allow it: { "factoryName": "quickload", "name": "SoySeq", "url": "http://igbquickload.org/soyseq", "loadPriority": "4", "mirror": "http://lorainelab-quickload.scidas.org/soyseq", "isEditable": "true" } ,
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Mason Meyer [ mason ]
                mason Mason Meyer (Inactive) made changes -
                Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-1200 [ IGBF-1200 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 2017 [ 47 ] Fall 2017, Spring 2018 [ 47, 48 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Hide
                Permalink
                mason Mason Meyer (Inactive) added a comment -

                My testing confirms that this issue is resolved. The soybean RNA-seq Quickload site has been added. The files in the "SoySeq" folder are opening as expected and are using the the proper back-up URL. There seem to be no side effects as a result of this change, so this story will now be closed.

                Show
                mason Mason Meyer (Inactive) added a comment - My testing confirms that this issue is resolved. The soybean RNA-seq Quickload site has been added. The files in the "SoySeq" folder are opening as expected and are using the the proper back-up URL. There seem to be no side effects as a result of this change, so this story will now be closed.
                mason Mason Meyer (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Testing In Progress [ 10003 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-1206 [ IGBF-1206 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Fix Version/s 9.0.1 Minor Release [ 10500 ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 17874 ] Fall 2019 Workflow Update [ 19826 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 19826 ] Revised Fall 2019 Workflow Update [ 21945 ]

                  People

                  • Assignee:
                    mason Mason Meyer (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
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                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: