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  1. IGB
  2. IGBF-1226

IGB doesn't read gzipped fasta file

        Details

        • Story Points:
          2
        • Sprint:
          B - Summer 2018

          Description

          Users tried to use a fasta.gz file as the sequence for a custom genome.
          This didn't work. IGB will work with fasta, but not fasta.gz.

          This was brought to our attention through this biostars post:
          https://biostar.usegalaxy.org/p/27494/

            Attachments

              Activity

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              ieclabau Ivory Blakley (Inactive) created issue -
              ieclabau Ivory Blakley (Inactive) made changes -
              Field Original Value New Value
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Sprint A - Spring 2018 [ 48 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked lower
              ann.loraine Ann Loraine made changes -
              Labels Beginner
              kkorey Kiran Korey (Inactive) made changes -
              Assignee Ann Loraine [ aloraine ] Kiran Korey [ kkorey ]
              kkorey Kiran Korey (Inactive) made changes -
              Status Open [ 1 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Story Points 2
              ann.loraine Ann Loraine made changes -
              Attachment S_cerevisiae_Apr_2011.fa.gz [ 14066 ]
              kkorey Kiran Korey (Inactive) made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Assignee Kiran Korey [ kkorey ] Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing [ 10301 ] Ready for Pull Request [ 10304 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ] Kiran Korey [ kkorey ]
              kkorey Kiran Korey (Inactive) made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Assignee Kiran Korey [ kkorey ] Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ] Mason Meyer [ mason ]
              mason Mason Meyer (Inactive) made changes -
              Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
              ieclabau Ivory Blakley (Inactive) made changes -
              Assignee Mason Meyer [ mason ] Ivory Blakley [ ieclabau ]
              ieclabau Ivory Blakley (Inactive) made changes -
              Fix Version/s 9.0.1 Minor Release [ 10500 ]
              ieclabau Ivory Blakley (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Testing In Progress [ 10003 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Workflow Loraine Lab Workflow [ 17914 ] Fall 2019 Workflow Update [ 19846 ]
              ann.loraine Ann Loraine made changes -
              Workflow Fall 2019 Workflow Update [ 19846 ] Revised Fall 2019 Workflow Update [ 21965 ]

                People

                • Assignee:
                  ieclabau Ivory Blakley (Inactive)
                  Reporter:
                  ieclabau Ivory Blakley (Inactive)
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  3 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: