Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.0.1 Minor Release
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Labels:
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Story Points:2
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Sprint:B - Summer 2018
Description
Users tried to use a fasta.gz file as the sequence for a custom genome.
This didn't work. IGB will work with fasta, but not fasta.gz.
This was brought to our attention through this biostars post:
https://biostar.usegalaxy.org/p/27494/
Attachments
Activity
Field | Original Value | New Value |
---|---|---|
Rank | Ranked higher |
Sprint | A - Spring 2018 [ 48 ] |
Rank | Ranked lower |
Labels | Beginner |
Assignee | Ann Loraine [ aloraine ] | Kiran Korey [ kkorey ] |
Status | Open [ 1 ] | In Progress [ 3 ] |
Story Points | 2 |
Attachment | S_cerevisiae_Apr_2011.fa.gz [ 14066 ] |
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Status | Needs 1st Level Review [ 10005 ] | Reviewing [ 10301 ] |
Assignee | Kiran Korey [ kkorey ] | Ann Loraine [ aloraine ] |
Status | Reviewing [ 10301 ] | Ready for Pull Request [ 10304 ] |
Assignee | Ann Loraine [ aloraine ] | Kiran Korey [ kkorey ] |
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Assignee | Kiran Korey [ kkorey ] | Ann Loraine [ aloraine ] |
Status | Reviewing Pull Request [ 10303 ] | Needs Testing [ 10002 ] |
Assignee | Ann Loraine [ aloraine ] | Mason Meyer [ mason ] |
Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
Assignee | Mason Meyer [ mason ] | Ivory Blakley [ ieclabau ] |
Fix Version/s | 9.0.1 Minor Release [ 10500 ] |
Resolution | Done [ 10000 ] | |
Status | Testing In Progress [ 10003 ] | Closed [ 6 ] |
Workflow | Loraine Lab Workflow [ 17914 ] | Fall 2019 Workflow Update [ 19846 ] |
Workflow | Fall 2019 Workflow Update [ 19846 ] | Revised Fall 2019 Workflow Update [ 21965 ] |
Created using shell commands:
wget http://igbquickload.org/S_cerevisiae_Apr_2011/S_cerevisiae_Apr_2011.2bit
twoBitToFa S_cerevisiae_Apr_2011.2bit S_cerevisiae_Apr_2011.fa
gzip S_cerevisiae_Apr_2011.fa
twoBitToFa is from Jim Kent code. Google to find it.