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  1. IGB
  2. IGBF-1229

file location of synonyms.txt in user guide

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          0.25
        • Sprint:
          Summer 2018 Part 2

          Description

          The user guide documentation says that the existing synonyms.txt file can be found at:
          Integrated Genome Browswer / core / igb / scr / main / resources / synonyms.txt

          But in fact the file is located here (path on bitbucket):
          Integrated Genome Browser / core / synonym-lookup / src / main / resources / synonyms.txt

          and here (additional path on my machine, not available on bitbucket):
          Integrated Genome Browser / core / synonym-lookup / target / classes / synonyms.txt

          The outdated user guide page is here:
          https://wiki.transvar.org/display/igbman/Use+synonyms.txt+to+link+genome+version+names+to+each+other

          Users are directed to look at the current file before making changes, and using the current file as an example is the only way we tell users how to format their synonyms file.

            Attachments

              Issue Links

              relates to

              Documentation - When documentation is missing or wrong IGBF-1298 species.txt vs synonyms.txt

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1187 Display message to user to restart IGB after chromosome or version synonym file is configured in IGB preferences

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                ieclabau Ivory Blakley (Inactive) created issue -
                ieclabau Ivory Blakley (Inactive) made changes -
                Field Original Value New Value
                Link This issue relates to IGBF-1187 [ IGBF-1187 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Link This issue relates to IGBF-1298 [ IGBF-1298 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Open [ 1 ] Closed [ 6 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Fix Version/s 9.0.2 [ 10600 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Sprint Summer 2018 Part 2 [ 49 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Ivory Blakley [ ieclabau ]
                ann.loraine Ann Loraine made changes -
                Fix Version/s 9.0.2 Minor Release [ 10600 ]
                Story Points 0.25
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 17917 ] Fall 2019 Workflow Update [ 19848 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 19848 ] Revised Fall 2019 Workflow Update [ 21967 ]

                  People

                  • Assignee:
                    ieclabau Ivory Blakley (Inactive)
                    Reporter:
                    ieclabau Ivory Blakley (Inactive)
                  • Votes:
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                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: