Details
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Type: Bug
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:3
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Sprint:Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3, Spring 2019 Sprint 4, Spring 2019 Sprint 5
Description
The label for the zoom stripe covers up the residues nearest the zoom stripe.
Users often have to toggle the zoom stripe label on and off if they want to know both the residue and the exact location.
If the zoom stripe label appeared slightly higher in the window, users would be able to see the coordinate and the residue at the same time.
Consult with Dr. Freese for detailed description of the problem & potential solution.
Task is:
- Understand & better document (as required) the problem
- Investigate potential solutions
- Make note of classes and packages involved
Note: Labeled Intermediate level difficulty, but this is a provisional assessment. (May need to re-label as Advanced depending on results of above.)
Attachments
Issue Links
Activity
Ivory Blakley (Inactive)
created issue -
Ivory Blakley (Inactive)
made changes -
Field | Original Value | New Value |
---|---|---|
Rank | Ranked higher |
Ivory Blakley (Inactive)
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Comment |
[ I just started to write up this issue again, because of how very annoyed I was about this.
Then I remembered I might have made it an issue already. ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Rank | Ranked lower |
Nowlan Freese
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Summary | zoom stripe label blocks residues | Investigate how to stop zoom stripe label from blocking residues in Coordinates Track |
Ann Loraine
made changes -
Description |
The label for the zoom stripe covers up the residues nearest the zoom stripe.
Users often have to toggle the zoom stripe label on and off if they want to know both the residue and the exact location. If the zoom stripe label appeared slightly higher in the window, users would be able to see the coordinate and the residue at the same time. |
The label for the zoom stripe covers up the residues nearest the zoom stripe.
Users often have to toggle the zoom stripe label on and off if they want to know both the residue and the exact location. If the zoom stripe label appeared slightly higher in the window, users would be able to see the coordinate and the residue at the same time. Consult with Dr. Freese for detailed description of the problem & potential solution. |
Ann Loraine
made changes -
Description |
The label for the zoom stripe covers up the residues nearest the zoom stripe.
Users often have to toggle the zoom stripe label on and off if they want to know both the residue and the exact location. If the zoom stripe label appeared slightly higher in the window, users would be able to see the coordinate and the residue at the same time. Consult with Dr. Freese for detailed description of the problem & potential solution. |
The label for the zoom stripe covers up the residues nearest the zoom stripe.
Users often have to toggle the zoom stripe label on and off if they want to know both the residue and the exact location. If the zoom stripe label appeared slightly higher in the window, users would be able to see the coordinate and the residue at the same time. Consult with Dr. Freese for detailed description of the problem & potential solution. Task is: * Understand & better document (as required) the problem * Investigate potential solutions * Make note of classes and packages involved |
Ann Loraine
made changes -
Labels | Intermediate |
Ann Loraine
made changes -
Description |
The label for the zoom stripe covers up the residues nearest the zoom stripe.
Users often have to toggle the zoom stripe label on and off if they want to know both the residue and the exact location. If the zoom stripe label appeared slightly higher in the window, users would be able to see the coordinate and the residue at the same time. Consult with Dr. Freese for detailed description of the problem & potential solution. Task is: * Understand & better document (as required) the problem * Investigate potential solutions * Make note of classes and packages involved |
The label for the zoom stripe covers up the residues nearest the zoom stripe.
Users often have to toggle the zoom stripe label on and off if they want to know both the residue and the exact location. If the zoom stripe label appeared slightly higher in the window, users would be able to see the coordinate and the residue at the same time. Consult with Dr. Freese for detailed description of the problem & potential solution. Task is: * Understand & better document (as required) the problem * Investigate potential solutions * Make note of classes and packages involved *Note*: Labeled Intermediate level difficulty, but this is a provisional assessment. |
Ann Loraine
made changes -
Description |
The label for the zoom stripe covers up the residues nearest the zoom stripe.
Users often have to toggle the zoom stripe label on and off if they want to know both the residue and the exact location. If the zoom stripe label appeared slightly higher in the window, users would be able to see the coordinate and the residue at the same time. Consult with Dr. Freese for detailed description of the problem & potential solution. Task is: * Understand & better document (as required) the problem * Investigate potential solutions * Make note of classes and packages involved *Note*: Labeled Intermediate level difficulty, but this is a provisional assessment. |
The label for the zoom stripe covers up the residues nearest the zoom stripe.
Users often have to toggle the zoom stripe label on and off if they want to know both the residue and the exact location. If the zoom stripe label appeared slightly higher in the window, users would be able to see the coordinate and the residue at the same time. Consult with Dr. Freese for detailed description of the problem & potential solution. Task is: * Understand & better document (as required) the problem * Investigate potential solutions * Make note of classes and packages involved *Note*: Labeled Intermediate level difficulty, but this is a provisional assessment. (May need to re-label as Advanced depending on results of above.) |
Ann Loraine
made changes -
Status | Open [ 1 ] | Open [ 1 ] |
Ann Loraine
made changes -
Sprint | Winter 2018 Sprint 3 [ 58 ] |
Ann Loraine
made changes -
Rank | Ranked lower |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Story Points | 1 |
Nowlan Freese
made changes -
Attachment | zoomStripe.png [ 14212 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | Open [ 1 ] | In Progress [ 3 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | In Progress [ 3 ] | Open [ 1 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | Open [ 1 ] | In Progress [ 3 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Winter 2018 Sprint 3 [ 58 ] | Winter 2018 Sprint 3, Spring 2019 Sprint 1 [ 58, 59 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Riddhi Jagdish Patil (Inactive)
made changes -
Attachment | homosapiens.PNG [ 14233 ] | |
Attachment | stack_height.PNG [ 14234 ] | |
Attachment | thalina.PNG [ 14235 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Attachment | stack_height.PNG [ 14234 ] |
Nowlan Freese
made changes -
Story Points | 1 | 3 |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Ann Loraine
made changes -
Status | Needs 1st Level Review [ 10005 ] | Reviewing [ 10301 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Status | Reviewing [ 10301 ] | Open [ 1 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] | Riddhi Jagdish Patil [ rpatil14 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | Open [ 1 ] | In Progress [ 3 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Riddhi Jagdish Patil (Inactive)
made changes -
Attachment | Test_document_IGBF_1230.xlsx [ 14256 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | In Progress [ 3 ] | Pull Request Submitted [ 10101 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Open [ 1 ] |
Ann Loraine
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Ann Loraine
made changes -
Ann Loraine
made changes -
Status | Open [ 1 ] | Open [ 1 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Attachment | main_view_zoom_stripe_label.PNG [ 14258 ] | |
Attachment | protAnnot_zoom_stripe_label.PNG [ 14259 ] | |
Attachment | sliced_view_zoom_stripe_label.PNG [ 14260 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Attachment | homosapiens.PNG [ 14233 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Attachment | thalina.PNG [ 14235 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | Open [ 1 ] | Pull Request Submitted [ 10101 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Open [ 1 ] |
Ann Loraine
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | Open [ 1 ] | Pull Request Submitted [ 10101 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Needs Testing [ 10002 ] |
Ann Loraine
made changes -
Summary | Investigate how to stop zoom stripe label from blocking residues in Coordinates Track | Stop zoom stripe label from blocking residues in Coordinates Track |
Jill Jenkins (Inactive)
made changes -
Attachment | Screen Shot 2019-02-14 at 5.49.16 PM.png [ 14266 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | Needs Testing [ 10002 ] | Open [ 1 ] |
Ann Loraine
made changes -
Sprint | Winter 2018 Sprint 3, Spring 2019 Sprint 1 [ 58, 59 ] | Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2 [ 58, 59, 60 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | Open [ 1 ] | In Progress [ 3 ] |
Ann Loraine
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Status | In Progress [ 3 ] | Open [ 1 ] |
Ann Loraine
made changes -
Sprint | Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2 [ 58, 59, 60 ] | Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3 [ 58, 59, 60, 61 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3 [ 58, 59, 60, 61 ] | Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3, Spring 2019 Sprint 4 [ 58, 59, 60, 61, 62 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3, Spring 2019 Sprint 4 [ 58, 59, 60, 61, 62 ] | Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3, Spring 2019 Sprint 4, Spring 2019 Sprint 5 [ 58, 59, 60, 61, 62, 63 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Resolution | Done [ 10000 ] | |
Status | Open [ 1 ] | Closed [ 6 ] |
Ann Loraine
made changes -
Workflow | Loraine Lab Workflow [ 17918 ] | Fall 2019 Workflow Update [ 19849 ] |
Ann Loraine
made changes -
Workflow | Fall 2019 Workflow Update [ 19849 ] | Revised Fall 2019 Workflow Update [ 21968 ] |
Issue :- Zoom stripe label blocking the residue sequence.
Solution :- Moved the zoom stripe label up on the Y-axis to prevent it from overlapping the genome residue sequence.
Files changed:-
genoviz_sdk/pom.xml
genoviz_sdk/src/main/java/com/affymetrix/genoviz/glyph/StringGlyph.java
genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/Shadow.java
pom.xml
Testing steps:-
1) Click on any genome to load the sequence in IGB project.
2) Click on Load Sequence button from top right corner to load the genome residue.
3) Click anywhere to see the zoom stripe label.
Test results:-
Please find the attached screenshots for test results.
Code changes:-
https://bitbucket.org/rpatil14/riddhi-genovizsdk/branch/IGBF-1230#diff
Note:- Changed the genoviz_sdk and genovizTutorial jar verrsion from 1.7 to 1.8. We need to change pom.xml of IGB project to use 1.8 version og genoviz module. So, the file pom.xml of IGB project will be committed once, these changes are pushed to the team repository in order to prevent any breakage.