Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Minor
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:1
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Sprint:Winter 2018 Sprint 3, Spring 2019 Sprint 1
Description
If you open a file in IGB without selecting a genome, you can view the file but there is no genome sequence.
So the Load Sequence option probably shouldn't be enabled.
As it is, you can click the Load Sequence button, and you get an error that says:
"Couldn't locate the partial sequence. Try loading the full sequence."
This error message does not make sense given the context. (In other contexts it does make sense.)
The error message for this particular workflow should be more informative. Or, the button "Load Sequence" should not be active when no sequence file is available.
The task:
- Investigate and identify files/code involved.
- Determine: is there any way for IGB to determine if the reference genome sequence is available to load before showing that message?
- Design a solution that improves user experience.
Attachments
Issue Links
Activity
Ivory Blakley (Inactive)
created issue -
Nowlan Freese
made changes -
Field | Original Value | New Value |
---|---|---|
Assignee | Ann Loraine [ aloraine ] |
Nowlan Freese
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Summary | poor error message | Improve error message shown upon opening a file before selecting a genome version |
Ann Loraine
made changes -
Story Points | 0.5 | |
Sprint | Winter 2018 Sprint 3 [ 58 ] | |
Labels | Beginner |
Riddhi Jagdish Patil (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | Open [ 1 ] | In Progress [ 3 ] |
Ann Loraine
made changes -
Description |
If you open a file in IGB without selecting a genome, you can view the file but there is no genome sequence.
So the Load Sequence option probably shouldn't be enabled. As it is, you can click the Load Sequence button, and you get an error that says: "Couldn't locate the partial sequence. Try loading the full sequence." Which makes not sense. The button should be disabled. Or it should produce a window that informs the user about why that action is not possible. |
If you open a file in IGB without selecting a genome, you can view the file but there is no genome sequence.
So the Load Sequence option probably shouldn't be enabled. As it is, you can click the Load Sequence button, and you get an error that says: "Couldn't locate the partial sequence. Try loading the full sequence." This error message does not make sense given the context. (In other contexts it *does* make sense.) The error message for this particular workflow should be more informative. Or, the button "Load Sequence" should not be active when no sequence file is available. The task: * Investigate and identify files/code involved. * Determine: is there any way for IGB to determine if a sequence file is available before showing that message? * Design a solution that improves user experience. |
Ann Loraine
made changes -
Story Points | 0.5 | 1 |
Labels | Beginner | Intermediate |
Ann Loraine
made changes -
Issue Type | Improvement [ 4 ] | Task [ 3 ] |
Ann Loraine
made changes -
Description |
If you open a file in IGB without selecting a genome, you can view the file but there is no genome sequence.
So the Load Sequence option probably shouldn't be enabled. As it is, you can click the Load Sequence button, and you get an error that says: "Couldn't locate the partial sequence. Try loading the full sequence." This error message does not make sense given the context. (In other contexts it *does* make sense.) The error message for this particular workflow should be more informative. Or, the button "Load Sequence" should not be active when no sequence file is available. The task: * Investigate and identify files/code involved. * Determine: is there any way for IGB to determine if a sequence file is available before showing that message? * Design a solution that improves user experience. |
If you open a file in IGB without selecting a genome, you can view the file but there is no genome sequence.
So the Load Sequence option probably shouldn't be enabled. As it is, you can click the Load Sequence button, and you get an error that says: "Couldn't locate the partial sequence. Try loading the full sequence." This error message does not make sense given the context. (In other contexts it *does* make sense.) The error message for this particular workflow should be more informative. Or, the button "Load Sequence" should not be active when no sequence file is available. The task: * Investigate and identify files/code involved. * Determine: is there any way for IGB to determine if the reference genome sequence is available to load before showing that message? * Design a solution that improves user experience. |
Nowlan Freese
made changes -
Riddhi Jagdish Patil (Inactive)
made changes -
Riddhi Jagdish Patil (Inactive)
made changes -
Attachment | 1_a.PNG [ 14225 ] | |
Attachment | 1_b_i.PNG [ 14226 ] | |
Attachment | 1_b_ii.PNG [ 14227 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | Reviewing [ 10301 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] | Ann Loraine [ aloraine ] |
Nowlan Freese
made changes -
Status | Reviewing [ 10301 ] | Needs 1st Level Review [ 10005 ] |
Nowlan Freese
made changes -
Assignee | Ann Loraine [ aloraine ] |
Nowlan Freese
made changes -
Comment |
[ The 1st level review looks good, however I would like Dr. Loraine to take a look, as there is a change to the default IGB behavior.
If a user drags and drops a sequence file (.2bit, .fasta, etc) into the IGB home screen, IGB now assumes the user meant to load that file as the genome. I think this works very well. If a user is dragging and dropping (instead of using File > Open File.../Open Genome from File...) then they are expecting IGB to make smart assumptions. Before, if a user dragged and dropped a sequence file into the IGB home screen it would load the file within the data track. ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Attachment | 1_b_ii.PNG [ 14227 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Attachment | 1_a.PNG [ 14225 ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | Reviewing [ 10301 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Status | Reviewing [ 10301 ] | Ready for Pull Request [ 10304 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] | Riddhi Jagdish Patil [ rpatil14 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Nowlan Freese
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Needs Testing [ 10002 ] |
Ann Loraine
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Winter 2018 Sprint 3 [ 58 ] | Winter 2018 Sprint 3, Spring 2019 Sprint 1 [ 58, 59 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Riddhi Jagdish Patil (Inactive)
made changes -
Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
Riddhi Jagdish Patil (Inactive)
made changes -
Rank | Ranked lower |
Sai Charan Reddy Vallapureddy (Inactive)
made changes -
Resolution | Done [ 10000 ] | |
Status | Testing In Progress [ 10003 ] | Closed [ 6 ] |
Sai Charan Reddy Vallapureddy (Inactive)
made changes -
Assignee | Riddhi Jagdish Patil [ rpatil14 ] |
Ann Loraine
made changes -
Workflow | Loraine Lab Workflow [ 18003 ] | Fall 2019 Workflow Update [ 19898 ] |
Ann Loraine
made changes -
Workflow | Fall 2019 Workflow Update [ 19898 ] | Revised Fall 2019 Workflow Update [ 22017 ] |