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  1. IGB
  2. IGBF-1327

Investigate: Slow GFF file loading

        Details

        • Type: Task
        • Status: In Progress (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          See files in smoke testing quickload
          http://igbquickload.org/smokeTestingQuickload/

          On one Windows machine, GFF file does not load (at all).
          On another machine, it loads slowly.

          This was discovered when testing for the 9.0.1 release, and it exists in 9.0.0 as well.

          For this task, investigate why loading is so slow.

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              ieclabau Ivory Blakley (Inactive) created issue -
              ieclabau Ivory Blakley (Inactive) made changes -
              Field Original Value New Value
              Summary gff files do not load, or not in timely mannor gff files do not load, or not in timely manner
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              kkorey Kiran Korey (Inactive) added a comment -

              In windows: in both 9.0.0 and 9.0.1, it took around 2mins to load a particular region.

              Show
              kkorey Kiran Korey (Inactive) added a comment - In windows: in both 9.0.0 and 9.0.1, it took around 2mins to load a particular region.
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Summary gff files do not load, or not in timely manner GFF file loading fails or is slow
              ann.loraine Ann Loraine made changes -
              Sprint B - Summer 2018 [ 48 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Summary GFF file loading fails or is slow Speed up GFF file loading
              ann.loraine Ann Loraine made changes -
              Rank Ranked lower
              ann.loraine Ann Loraine made changes -
              Workflow Loraine Lab Workflow [ 18019 ] Fall 2019 Workflow Update [ 18874 ]
              ann.loraine Ann Loraine made changes -
              Workflow Fall 2019 Workflow Update [ 18874 ] Revised Fall 2019 Workflow Update [ 20999 ]
              Status Open [ 1 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Summary Speed up GFF file loading Investigate: Slow GFF file loading
              ann.loraine Ann Loraine made changes -
              Description See files in smoke testing quickload
              http://igbquickload.org/smokeTestingQuickload/

              On one Windows machine, GFF file does not load (at all).
              On another machine, it loads slowly.

              This was discovered when testing for the 9.0.1 release, and it exists in 9.0.0 as well.               		See files in smoke testing quickload
              http://igbquickload.org/smokeTestingQuickload/

              On one Windows machine, GFF file does not load (at all).
              On another machine, it loads slowly.

              This was discovered when testing for the 9.0.1 release, and it exists in 9.0.0 as well.

              For this task, investigate why loading is so slow.
              Hide
              Permalink
              ann.loraine Ann Loraine added a comment -

              This may be because the entire file is being read more than once.

              Show
              ann.loraine Ann Loraine added a comment - This may be because the entire file is being read more than once.
              ann.loraine Ann Loraine made changes -
              Epic Link IGBF-1765 [ 17855 ]
              ann.loraine Ann Loraine made changes -
              Story Points 0.75
              ann.loraine Ann Loraine made changes -
              Labels Intermediate

                People

                • Assignee:
                  Unassigned
                  Reporter:
                  ieclabau Ivory Blakley (Inactive)
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                  Dates

                  • Created:
                    Updated: