Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-135

investigate potential problem with QL samtools access

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          0.5

          Description

          I noticed today that this samtools query doesn't work on IGBQuickLoad or our backup site on Bioviz:

          $ samtools view -H http://bioviz.org/quickload/A_thaliana_Jun_2009/LFYChIPSeq/LFY.bam chr1 > chr1.sam
          [knet_seek] SEEK_END is not supported for HTTP. Offset is unchanged.
          $ samtools view -H http://igbquickload.org/quickload/A_thaliana_Jun_2009/LFYChIPSeq/LFY.bam chr1 > chr1.sam
          [knet_seek] SEEK_END is not supported for HTTP. Offset is unchanged.

          This may affect IGB.

            Attachments

              Activity

                People

                • Assignee:
                  Unassigned
                  Reporter:
                  ann.loraine Ann Loraine
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  2 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: