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  1. IGB
  2. IGBF-1382

Investigate why BAR links not loading data into IGB

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          0.5
        • Sprint:
          Fall 2018 1, Fall 2018 Sprint 2

          Description

          Go to https://bar.utoronto.ca/eFP-Seq_Browser/
          Click Load Data to load data for a test gene
          Click Show Alignments in IGB
          Observe that IGB zooms & scrolls to the right place but data do not load.
          Find out why not & fix it on our end if possible.

          Note: Submit pull requests to https://bitbucket.org/lorainelab/bioviz

            Attachments

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1402 Error while loading data from eFP-Seq Browser (Show: Alignments in IGB) when using Firefox

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Assignee Sneha Ramesh Watharkar [ jdaly ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Assignee Sneha Ramesh Watharkar [ jdaly ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Assignee Sneha Ramesh Watharkar [ jdaly ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 2018 1 [ 51 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked lower
                ann.loraine Ann Loraine made changes -
                Assignee Sneha Ramesh Watharkar [ jdaly ] Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment - - edited

                Fixed. Bug caused by two things:
                1) server_url needs to precisely match what appears in IGB Preferences > Data Sources table
                2) I changed Quickload site to use http instead of https; BAR is using https
                Merged into master & deployed on main bioviz site.
                Assigning to Sneha to read and check the code.

                Show
                ann.loraine Ann Loraine added a comment - - edited Fixed. Bug caused by two things: 1) server_url needs to precisely match what appears in IGB Preferences > Data Sources table 2) I changed Quickload site to use http instead of https; BAR is using https Merged into master & deployed on main bioviz site. Assigning to Sneha to read and check the code.
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Sneha Ramesh Watharkar [ jdaly ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                Hide
                Permalink
                sneha Sneha Ramesh Watharkar (Inactive) added a comment -

                Prof. [~aloraine] Could you please add Link to branch

                Show
                sneha Sneha Ramesh Watharkar (Inactive) added a comment - Prof. [~aloraine] Could you please add Link to branch
                Hide
                Permalink
                sneha Sneha Ramesh Watharkar (Inactive) added a comment -

                Checked commit ID 619ace1 and looked at the code.
                Code changes look good!

                Show
                sneha Sneha Ramesh Watharkar (Inactive) added a comment - Checked commit ID 619ace1 and looked at the code. Code changes look good!
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Assignee Sneha Ramesh Watharkar [ jdaly ] Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Needs 1st Level Review [ 10005 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Closed [ 6 ] Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 2018 1 [ 51 ] Fall 2018 1, Fall 2018 Sprint 2 [ 51, 52 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                mason Mason Meyer (Inactive) made changes -
                Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
                mason Mason Meyer (Inactive) made changes -
                Assignee Mason Meyer [ mason ]
                Hide
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                mason Mason Meyer (Inactive) added a comment -

                I am not seeing this as resolved; when I try to load data from BAR to IGB, I am receiving an error on Bioviz that says: "Sorry - there was an error. Please reload the page to try again." But after trying several times, I am not able to load data from BAR to IGB.

                Are you seeing this as resolved? I am moving back to To-Do and re-assigning to Ann to determine next steps.

                Show
                mason Mason Meyer (Inactive) added a comment - I am not seeing this as resolved; when I try to load data from BAR to IGB, I am receiving an error on Bioviz that says: "Sorry - there was an error. Please reload the page to try again." But after trying several times, I am not able to load data from BAR to IGB. Are you seeing this as resolved? I am moving back to To-Do and re-assigning to Ann to determine next steps.
                mason Mason Meyer (Inactive) made changes -
                Assignee Mason Meyer [ mason ] Ann Loraine [ aloraine ]
                mason Mason Meyer (Inactive) made changes -
                Status Testing In Progress [ 10003 ] Open [ 1 ]
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                Reminder: Move to "In Progress" lane when you start working on it.

                Show
                ann.loraine Ann Loraine added a comment - Reminder: Move to "In Progress" lane when you start working on it.
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Srishti Tiwari [ stiwari8 ]
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment - - edited

                Correction: A new issue follows up on the errors observed by Mason during testing - IGBF-1402

                Show
                ann.loraine Ann Loraine added a comment - - edited Correction: A new issue follows up on the errors observed by Mason during testing - IGBF-1402
                ann.loraine Ann Loraine made changes -
                Assignee Srishti Tiwari [ stiwari8 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-1402 [ IGBF-1402 ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Open [ 1 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 18086 ] Fall 2019 Workflow Update [ 19934 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 19934 ] Revised Fall 2019 Workflow Update [ 22054 ]

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: