Details
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Type:
Improvement
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.0.2 Minor Release
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Labels:
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Story Points:0.25
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Sprint:Fall 2018 Sprint 3, Fall 2018 Sprint 4, Fall 2018 Sprint 5
Description
IGB Quickload sites are Web sites that host data for IGB. The IGB preferences system includes some default Quickload sites that are automatically available in IGB.
Add 2 new such sites to IGB:
name: DNA-Seq
address: http://lorainelab-quickload.scidas.org/dnaseq/
name: ChIP-Seq
address: http://lorainelab-quickload.scidas.org/chipseq/
To test DNA-Seq:
- Visit Solanum lycopersicum (tomato) Feb 2014 genome in IGB
- Confirm that you now see a folder named "DNA-Seq" in Available Data section of the Data Access tabbed panel
To test ChIP-Seq:
- Visit Arabidopisis thaliana Jun 2009 genome in IGB
- Confirm that you now see a folder named "ChIP-Seq" in Available Data section of the Data Access tabbed panel
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Assignee | Ann Loraine [ aloraine ] |
| Rank | Ranked higher |
| Summary | Add DNA-Seq Quickload source | Add DNA-Seq and ChIP-Seq Quickload sources |
| Description |
IGB Quickload sites are Web sites that host data for IGB. The IGB preferences system includes some default Quickload sites that are automatically available in IGB.
Add a new such site to IGB: name: DNA-Seq address: http://lorainelab-quickload.scidas.org/dnaseq/ To test: * Visit Solanum lycopersicum (tomato) Feb 2014 genome in IGB * Confirm that you now see a folder named "DNA-Seq" in the Available Data section of the Data Access tabbed panel |
IGB Quickload sites are Web sites that host data for IGB. The IGB preferences system includes some default Quickload sites that are automatically available in IGB.
Add 2 new such sites to IGB: name: DNA-Seq address: http://lorainelab-quickload.scidas.org/dnaseq/ name: ChIP-Seq address: http://lorainelab-quickload.scidas.org/chipseq/ To test DNA-Seq: * Visit Solanum lycopersicum (tomato) Feb 2014 genome in IGB * Confirm that you now see a folder named "DNA-Seq" in Available Data section of the Data Access tabbed panel To test ChIP-Seq: * Visit Arabidopisis thaliana Jun 2009 genome in IGB * Confirm that you now see a folder named "ChIP-Seq" in Available Data section of the Data Access tabbed panel |
| Sprint | Fall 2018 Sprint 3 [ 53 ] |
| Rank | Ranked higher |
| Rank | Ranked higher |
| Assignee | Srishti Tiwari [ stiwari8 ] |
| Status | Open [ 1 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Srishti Tiwari [ stiwari8 ] |
| Assignee | Pranav Sanjay Tambvekar [ ptambvek ] |
| Status | Needs 1st Level Review [ 10005 ] | Reviewing [ 10301 ] |
| Status | Reviewing [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Pranav Sanjay Tambvekar [ ptambvek ] | Srishti Tiwari [ stiwari8 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Open [ 1 ] |
| Status | Open [ 1 ] | Open [ 1 ] |
| Status | Open [ 1 ] | Reviewing [ 10301 ] |
| Assignee | Srishti Tiwari [ stiwari8 ] | Ann Loraine [ aloraine ] |
| Status | Reviewing [ 10301 ] | Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
| Assignee | Mason Meyer [ mason ] |
| Rank | Ranked higher |
| Sprint | Fall 2018 Sprint 3 [ 53 ] | Fall 2018 Sprint 3, Fall 2018 Sprint 4 [ 53, 54 ] |
| Rank | Ranked higher |
| Rank | Ranked higher |
| Sprint | Fall 2018 Sprint 3, Fall 2018 Sprint 4 [ 53, 54 ] | Fall 2018 Sprint 3, Fall 2018 Sprint 4, Fall 2018 Sprint 5 [ 53, 54, 55 ] |
| Rank | Ranked lower |
| Assignee | Mason Meyer [ mason ] | Ann Loraine [ aloraine ] |
| Resolution | Done [ 10000 ] | |
| Status | Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Workflow | Loraine Lab Workflow [ 18108 ] | Fall 2019 Workflow Update [ 19943 ] |
| Workflow | Fall 2019 Workflow Update [ 19943 ] | Revised Fall 2019 Workflow Update [ 22063 ] |