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  1. IGB
  2. IGBF-1414

Check that 2008 yeast genome synonyms are in species.txt and synonyms.txt

    Details

    • Story Points:
      0.25
    • Sprint:
      Fall 2018 Sprint 3

      Description

      • Find resource tab-delimited data files species.txt and synonyms.txt in the IGB code base
      • Check that they contain the following lines. If not, add them
      • Respect and preserve alphabetical order of entries in the file

      species.txt:
      Saccharomyces cerevisiae yeast S_cerevisiae sacCer

      synonyms.txt:
      S_cerevisiae_Jun_2008 sacCer2 SGD June 2008

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            ann.loraine Ann Loraine created issue -
            ann.loraine Ann Loraine made changes -
            Field Original Value New Value
            Link This issue relates to IGBF-1189 [ IGBF-1189 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            stiwari8 Srishti Tiwari (Inactive) made changes -
            Assignee Srishti Tiwari [ stiwari8 ]
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            stiwari8 Srishti Tiwari (Inactive) added a comment -

            The entries present in synonyms.txt and species.txt are as follows:

            in species.txt :
            Saccharomyces cerevisiae Budding Yeast S_cerevisiae sacCer Saccharomyces_cerevisiae

            in synonyms.txt :
            S_cerevisiae_Jun_2008 sacCer2

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            stiwari8 Srishti Tiwari (Inactive) added a comment - The entries present in synonyms.txt and species.txt are as follows: in species.txt : Saccharomyces cerevisiae Budding Yeast S_cerevisiae sacCer Saccharomyces_cerevisiae in synonyms.txt : S_cerevisiae_Jun_2008 sacCer2
            stiwari8 Srishti Tiwari (Inactive) made changes -
            Status Open [ 1 ] Needs 1st Level Review [ 10005 ]
            stiwari8 Srishti Tiwari (Inactive) made changes -
            Assignee Srishti Tiwari [ stiwari8 ] Ann Loraine [ aloraine ]
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            ann.loraine Ann Loraine added a comment -
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            ann.loraine Ann Loraine added a comment - Please add direct link to these files in BitBucket. For how to do this, see: https://stackoverflow.com/questions/11692124/link-latest-file-on-bitbucket-git-repository example) https://bitbucket.org/user/repository/src/branch/path/file
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ] Srishti Tiwari [ stiwari8 ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] Open [ 1 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
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            stiwari8 Srishti Tiwari (Inactive) added a comment -
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            stiwari8 Srishti Tiwari (Inactive) added a comment - Hello Dr. Loraine, Please find below links of species.txt and synonyms.txt. Please note that these entries were already present. On line 131: https://bitbucket.org/lorainelab/integrated-genome-browser/src/master/core/synonym-lookup/src/main/resources/species.txt On line 193: https://bitbucket.org/lorainelab/integrated-genome-browser/src/master/core/synonym-lookup/src/main/resources/synonyms.txt
            stiwari8 Srishti Tiwari (Inactive) made changes -
            Status Open [ 1 ] Needs 1st Level Review [ 10005 ]
            stiwari8 Srishti Tiwari (Inactive) made changes -
            Assignee Srishti Tiwari [ stiwari8 ]
            ann.loraine Ann Loraine made changes -
            Resolution Done [ 10000 ]
            Status Needs 1st Level Review [ 10005 ] Closed [ 6 ]
            ann.loraine Ann Loraine made changes -
            Assignee Srishti Tiwari [ stiwari8 ]
            ann.loraine Ann Loraine made changes -
            Workflow Loraine Lab Workflow [ 18119 ] Fall 2019 Workflow Update [ 19946 ]
            ann.loraine Ann Loraine made changes -
            Workflow Fall 2019 Workflow Update [ 19946 ] Revised Fall 2019 Workflow Update [ 22067 ]

              People

              • Assignee:
                stiwari8 Srishti Tiwari (Inactive)
                Reporter:
                ann.loraine Ann Loraine
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                Dates

                • Created:
                  Updated:
                  Resolved: