Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Blocker
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:2
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Epic Link:
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Sprint:Fall 2018 Sprint 3
Description
Set up and configure subversion repository to host Quickload foundational data sets.
- Use detachable EBS volume to house data
- Use micro EC2 instances to host Web server, subversion - svn.bioviz.org
- Install software to let users explore & search repository using a Web browser
- Support SSL (https)
- Document configuration
- Test that EBS can be re-mounted onto another EC2 and everything will still work
- Set up permanent IP for svn.bioviz.org
- Deploy data onto site for testing in IGB
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1395 [ 17470 ] |
| Rank | Ranked higher |
| Sprint | Fall 2018 Sprint 3 [ 53 ] | |
| Labels | Advanced |
| Status | Open [ 1 ] | Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Resolution | Done [ 10000 ] | |
| Status | Needs Testing [ 10002 ] | Closed [ 6 ] |
| Resolution | Done [ 10000 ] | |
| Status | Closed [ 6 ] | Needs Testing [ 10002 ] |
New subversion version-controlled Quickload is now deployed as http://igbquickload.org/quickload
(same URL as before)
To test:
- Check that files can be loaded from a couple test genomes - Arabidopsis, human (UCSC data sets)
- Check console for errors, compare with errors (if any) observed when only http://igbquickload.org/quickload/ is active
| Description |
Set up and configure subversion repository to host Quickload foundational data sets.
* Use detachable EBS volume to house data * Use micro EC2 instances to host Web server, subversion - svn.bioviz.org * Install software to let users explore & search repository using a Web browser * Support SSL (https) * Document configuration * Test that EBS can be re-mounted onto another EC2 and everything will still work * Set up permanent IP for svn.bioviz.org |
Set up and configure subversion repository to host Quickload foundational data sets.
* Use detachable EBS volume to house data * Use micro EC2 instances to host Web server, subversion - svn.bioviz.org * Install software to let users explore & search repository using a Web browser * Support SSL (https) * Document configuration * Test that EBS can be re-mounted onto another EC2 and everything will still work * Set up permanent IP for svn.bioviz.org * Deploy data onto site for testing in IGB |
| Resolution | Done [ 10000 ] | |
| Status | Needs Testing [ 10002 ] | Closed [ 6 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Workflow | Loraine Lab Workflow [ 18121 ] | Fall 2019 Workflow Update [ 19948 ] |
| Workflow | Fall 2019 Workflow Update [ 19948 ] | Revised Fall 2019 Workflow Update [ 22069 ] |
EC2 and EBS volumes now set up.
Note: within UNC Charlotte network svn.bioviz.org is invisible. To access, must use AWS address. However, the certificates are for Bioviz domain. Web browser will complain if you try to visit using Amazon address.
Set up viewvc for browsing:
To checkout quickload data quickload, read-only (no pushes to repo allowed):
svn co --username=guest --password=guest co https://svn.bioviz.org/repos/genomes/quickload
Documentation is in private Google Doc (Dr. Loraine's account)