Details
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Type: Improvement
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Status: Closed (View Workflow)
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Priority: Minor
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.5
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Sprint:Fall 2018 Sprint 3
Description
Find real soft clip data for testing purposes. The ideal dataset would have the following:
-paired-end data
-data with known structural variants
-preferably aligned in BAM format
One user who uses soft clipping in their research suggested the following links:
http://jimb.stanford.edu/giab-resources/
https://toolbox.google.com/datasetsearch
Attachments
Issue Links
- relates to
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IGBF-1291 Show soft-clipped bases in BAM files
- Closed
Here is a link to the following dataset:
https://figshare.com/articles/BAM_and_BAI_files/4530707/1
Data posted by: Reetta Holmila: Massively parallel deep sequencing of plasma cfDNA methylation in HCC and controls (categories: biomarkers)
This page lists both the BAM and BAI files.