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  1. IGB
  2. IGBF-1425

Investigate & fix error when opening SAM files from Quickload, URL

        Details

        • Story Points:
          1
        • Sprint:
          Fall 2018 Sprint 3, Fall 2018 Sprint 4, Fall 2018 Sprint 5

          Description

          Noticed by Kiran Korey:

          Attempts to open SAM files from Internet fail:

          http://igbquickload.org/smokeTestingQuickload/H_sapiens_Dec_2013/Sam/chr1.p22.3_noHeader.sam
          http://igbquickload.org/smokeTestingQuickload/H_sapiens_Dec_2013/Sam/chr1.p22.3_wHeader.sam

          However, if you download "wHeader" file and try to open it locally, it can be done.

          The "noHeader" file gives an error, however, even if the corresponding human genome is already opened and on display.

            Attachments

              Activity

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              ann.loraine Ann Loraine made changes -
              Workflow Fall 2019 Workflow Update [ 19956 ] Revised Fall 2019 Workflow Update [ 22077 ]
              ann.loraine Ann Loraine made changes -
              Workflow Loraine Lab Workflow [ 18131 ] Fall 2019 Workflow Update [ 19956 ]
              ann.loraine Ann Loraine made changes -
              Assignee Kiran Korey [ kkorey ]
              ann.loraine Ann Loraine made changes -
              Resolution Done [ 10000 ]
              Status Needs Testing [ 10002 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Fix Version/s 9.1.0 Major Release [ 10601 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked lower
              ann.loraine Ann Loraine made changes -
              Sprint Fall 2018 Sprint 3, Fall 2018 Sprint 4 [ 53, 54 ] Fall 2018 Sprint 3, Fall 2018 Sprint 4, Fall 2018 Sprint 5 [ 53, 54, 55 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Fix Version/s 9.0.2 Minor Release [ 10600 ]
              kkorey Kiran Korey (Inactive) made changes -
              Assignee Kiran Korey [ kkorey ]
              kkorey Kiran Korey (Inactive) made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              stiwari8 Srishti Tiwari (Inactive) made changes -
              Status Reviewing [ 10301 ] Ready for Pull Request [ 10304 ]
              stiwari8 Srishti Tiwari (Inactive) made changes -
              Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
              stiwari8 Srishti Tiwari (Inactive) made changes -
              Assignee Srishti Tiwari [ stiwari8 ] Kiran Korey [ kkorey ]
              stiwari8 Srishti Tiwari (Inactive) made changes -
              Assignee Srishti Tiwari [ stiwari8 ]
              kkorey Kiran Korey (Inactive) made changes -
              Assignee Kiran Korey [ kkorey ]
              kkorey Kiran Korey (Inactive) made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              kkorey Kiran Korey (Inactive) made changes -
              Status Open [ 1 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ] Kiran Korey [ kkorey ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing [ 10301 ] Open [ 1 ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              kkorey Kiran Korey (Inactive) made changes -
              Assignee Kiran Korey [ kkorey ]
              kkorey Kiran Korey (Inactive) made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Sprint Fall 2018 Sprint 3 [ 53 ] Fall 2018 Sprint 3, Fall 2018 Sprint 4 [ 53, 54 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              kkorey Kiran Korey (Inactive) made changes -
              Assignee Srishti Tiwari [ stiwari8 ] Kiran Korey [ kkorey ]
              kkorey Kiran Korey (Inactive) made changes -
              Status Open [ 1 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Rank Ranked higher
              ann.loraine Ann Loraine created issue -

                People

                • Assignee:
                  kkorey Kiran Korey (Inactive)
                  Reporter:
                  ann.loraine Ann Loraine
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                  Dates

                  • Created:
                    Updated:
                    Resolved: