Details
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Type: New Feature
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Status: Closed (View Workflow)
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Priority: Minor
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:2.5
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Epic Link:
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Sprint:Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep
Description
The track operation Depth Graph (All) is used to summarize the depth of reads. It does not include soft-clipped parts of the read.
Add Depth Graph (Soft-clip) as a track operation for bam/sam. This would create a depth graph for just soft-clip parts of reads.
This should be possible to do by copying how Depth Graph (All) functions, but using only syms of instance BamSoftChildSingletonSeqSym.
Attachments
Issue Links
Activity
Nowlan Freese
created issue -
Nowlan Freese
made changes -
Ann Loraine
made changes -
Workflow | Loraine Lab Workflow [ 18149 ] | Fall 2019 Workflow Update [ 18915 ] |
Ann Loraine
made changes -
Workflow | Fall 2019 Workflow Update [ 18915 ] | Revised Fall 2019 Workflow Update [ 21042 ] |
Status | Open [ 1 ] | To-Do [ 10305 ] |
Ann Loraine
made changes -
Epic Link | IGBF-1765 [ 17855 ] |
Ann Loraine
made changes -
Story Points | 5 | 2.5 |
Sprint | Summer 4: 14 Jul - 28 Jul [ 99 ] | |
Labels | Intermediate |
Ann Loraine
made changes -
Sprint | Summer 4: 14 Jul - 28 Jul [ 99 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Summer 5: 29 Jul - 12 Aug [ 100 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Summer 5: 3 Aug - 14 Aug [ 100 ] | Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug [ 100, 101 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Jay Chamma (Inactive)
made changes -
Assignee | Jay Chamma [ gchamma ] |
Jay Chamma (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Jay Chamma (Inactive)
made changes -
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Jay Chamma (Inactive)
made changes -
Assignee | Jay Chamma [ gchamma ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Philip Badzuh (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Philip Badzuh (Inactive)
made changes -
Assignee | Philip Badzuh [ pbadzuh ] |
Ann Loraine
made changes -
Sprint | Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug [ 100, 101 ] | Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep [ 100, 101, 102 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Philip Badzuh (Inactive)
made changes -
Attachment | Leaf1.small.aligned.sorted.softClipped.bam [ 14848 ] | |
Attachment | Leaf1.small.aligned.sorted.softClipped.bam.bai [ 14849 ] | |
Attachment | softClip.bam [ 14850 ] | |
Attachment | softClip.bam.bai [ 14851 ] |
Philip Badzuh (Inactive)
made changes -
Assignee | Philip Badzuh [ pbadzuh ] | Sai Supreeth Segu [ ssegu ] |
Philip Badzuh (Inactive)
made changes -
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Sai Supreeth Segu (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Sai Supreeth Segu (Inactive)
made changes -
Attachment | SoftClip.png [ 14857 ] |
Sai Supreeth Segu (Inactive)
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Sai Supreeth Segu (Inactive)
made changes -
Assignee | Sai Supreeth Segu [ ssegu ] |
Ann Loraine
made changes -
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Nowlan Freese
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] | Sai Supreeth Segu [ ssegu ] |
Sai Supreeth Segu (Inactive)
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Sai Supreeth Segu (Inactive)
made changes -
Assignee | Sai Supreeth Segu [ ssegu ] |
Ann Loraine
made changes -
Sprint | Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep [ 100, 101, 102 ] | Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep [ 100, 101, 102, 103 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Nowlan Freese
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] | Sai Supreeth Segu [ ssegu ] |
Nowlan Freese
made changes -
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Nowlan Freese
made changes -
Fix Version/s | 9.1.6 Major Release [ 10604 ] |
Nowlan Freese
made changes -
Ann Loraine
made changes -
Fix Version/s | 9.1.6 Major Release [ 10604 ] |
Please see my current progress and notes regarding this issue:
https://bitbucket.org/pbadzuh/igb_pbdev/branch/IGBF-1443#diff