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  1. IGB
  2. IGBF-1443

Implement Depth Graph (Soft-clip)

    Details

    • Type: New Feature
    • Status: Closed (View Workflow)
    • Priority: Minor
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
    • Story Points:
      2.5
    • Sprint:
      Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug, Summer 7: 31 Aug - 11 Sep, Fall 1: 14 Sep - 25 Sep

      Description

      The track operation Depth Graph (All) is used to summarize the depth of reads. It does not include soft-clipped parts of the read.

      Add Depth Graph (Soft-clip) as a track operation for bam/sam. This would create a depth graph for just soft-clip parts of reads.

      This should be possible to do by copying how Depth Graph (All) functions, but using only syms of instance BamSoftChildSingletonSeqSym.

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              • Assignee:
                ssegu Sai Supreeth Segu (Inactive)
                Reporter:
                nfreese Nowlan Freese
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                • Created:
                  Updated:
                  Resolved: