Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 10.0.0 Major Release
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Labels:
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Story Points:3
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Epic Link:
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Sprint:Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 2 2023 Sep 17, Fall 4 2023 Oct 16
Description
Discussion on twitter:
https://twitter.com/pjacock/status/500208907651153920
CRAM is a compressed, random-access file format used instead of BAM. It may be better. Not yet widely used but may be in future. Supporting CRAM could benefit users.
Attachments
Issue Links
- is blocked by
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IGBF-3464 Deploy htsjdk-igb
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- Closed
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Activity
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-165 [ 14687 ] |
Rank | Ranked higher |
Rank | Ranked lower |
Rank | Ranked lower |
Rank | Ranked lower |
Rank | Ranked lower |
Epic Link | IGBF-165 [ 14687 ] | IGBF-440 [ 15498 ] |
Rank | Ranked lower |
Rank | Ranked higher |
Assignee | David Norris [ dcnorris ] |
Rank | Ranked higher |
Rank | Ranked higher |
Rank | Ranked higher |
Rank | Ranked higher |
Story Points | 1 | |
Sprint | Winter 2018 Sprint 3 [ 58 ] | |
Labels | Advanced |
Rank | Ranked higher |
Sprint | Winter 2018 Sprint 3 [ 58 ] | Winter 2018 Sprint 3, Spring 2019 Sprint 1 [ 58, 59 ] |
Rank | Ranked higher |
Sprint | Winter 2018 Sprint 3, Spring 2019 Sprint 1 [ 58, 59 ] | Winter 2018 Sprint 3 [ 58 ] |
Rank | Ranked lower |
Sprint | Winter 2018 Sprint 3 [ 58 ] | Winter 2018 Sprint 3, Spring 2019 Sprint 2 [ 58, 60 ] |
Rank | Ranked higher |
Sprint | Winter 2018 Sprint 3, Spring 2019 Sprint 2 [ 58, 60 ] | Winter 2018 Sprint 3 [ 58 ] |
Rank | Ranked lower |
Fix Version/s | 9.1.0 Major Release [ 10601 ] | |
Story Points | 1 | 2 |
Sprint | Winter 2018 Sprint 3 [ 58 ] | Winter 2018 Sprint 3, Spring 2019 Sprint 6 [ 58, 64 ] |
Rank | Ranked higher |
Sprint | Winter 2018 Sprint 3, Spring 2019 Sprint 6 [ 58, 64 ] | Winter 2018 Sprint 3, Spring 2019 Sprint 7 [ 58, 66 ] |
Story Points | 2 | 3.5 |
Comment | [ BAM files are too big :-) ] |
Sprint | Winter 2018 Sprint 3, Spring 2019 Sprint 7 [ 58, 66 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8 [ 58, 67 ] |
Rank | Ranked lower |
Rank | Ranked higher |
Story Points | 3.5 | 2 |
Story Points | 2 | 3 |
Story Points | 3 | 2 |
Assignee | Shamika Gajanan Kulkarni [ shamika ] |
Status | Open [ 1 ] | In Progress [ 3 ] |
Status | In Progress [ 3 ] | Open [ 1 ] |
Status | Open [ 1 ] | In Progress [ 3 ] |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8 [ 58, 67 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Summer 2019 Sprint 9 [ 58, 67, 68 ] |
Rank | Ranked higher |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Summer 2019 Sprint 9 [ 58, 67, 68 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Summer 2019 Sprint 11 [ 58, 67, 70 ] |
Assignee | Shamika Gajanan Kulkarni [ shamika ] |
Status | In Progress [ 3 ] | Open [ 1 ] |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Summer 2019 Sprint 11 [ 58, 67, 70 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Summer 2019 Sprint 12 [ 58, 67, 71 ] |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Summer 2019 Sprint 12 [ 58, 67, 71 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Summer 2019 Sprint 13 [ 58, 67, 72 ] |
Rank | Ranked lower |
Rank | Ranked higher |
Rank | Ranked lower |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Summer 2019 Sprint 13 [ 58, 67, 72 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Summer 2019 Sprint 14 [ 58, 67, 73 ] |
Workflow | Loraine Lab Workflow [ 18183 ] | Fall 2019 Workflow Update [ 18723 ] |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 2019 Sprint 2 [ 58, 67, 73 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 2019 Sprint 6 [ 58, 67, 76 ] |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 2019 Sprint 5 [ 58, 67, 76 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 2019 Sprint 4 [ 58, 67, 75 ] |
Rank | Ranked higher |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 4 : 30 Sep to 11 Oct [ 58, 67, 75 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 9 : 9 Dec to 20 Dec [ 58, 67, 80 ] |
Workflow | Fall 2019 Workflow Update [ 18723 ] | Revised Fall 2019 Workflow Update [ 20845 ] |
Status | Open [ 1 ] | In Progress [ 3 ] |
Fix Version/s | 9.1.0 Major Release [ 10601 ] |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 9 : 9 Dec to 20 Dec [ 58, 67, 80 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8 [ 58, 67 ] |
Rank | Ranked higher |
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
Rank | Ranked higher |
Rank | Ranked lower |
Rank | Ranked higher |
Rank | Ranked lower |
Story Points | 2 | 3 |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8 [ 58, 67 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 2 2023 Sep 17 [ 58, 67, 178 ] |
Assignee | Kaushik Gopu [ kgopu ] |
Attachment | A_thaliana_Jun_2009_Chr1.bam [ 17963 ] | |
Attachment | A_thaliana_Jun_2009_Chr1.bam.bai [ 17964 ] | |
Attachment | A_thaliana_Jun_2009_Chr1.cram [ 17965 ] | |
Attachment | A_thaliana_Jun_2009_Chr1.sam [ 17966 ] |
Attachment | A_thaliana_Jun_2009_Chr1.cram.crai [ 17967 ] |
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 2 2023 Sep 17 [ 58, 67, 178 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 2 2023 Sep 17, Fall 3 2023 Oct 2 [ 58, 67, 178, 179 ] |
Rank | Ranked higher |
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Sprint | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 2 2023 Sep 17, Fall 3 2023 Oct 2 [ 58, 67, 178, 179 ] | Winter 2018 Sprint 3, Summer 2019 Sprint 8, Fall 2 2023 Sep 17, Fall 4 [ 58, 67, 178, 180 ] |
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Fix Version/s | 10.0.0 Major Release [ 10900 ] |