Obtain and document fastq sequence data for breast cancer

Bioinformatics.ca (bioinformatics training nexus in Canada) offers an a workshop on bioinformatics of cancer that focuses on sequencing applications.

In Module 4 (see: https://bioinformaticsdotca.github.io/BiCG_2018_mod3_mapping) students download data from a breast cancer tumor sample (HCC1395) and align it to a 1000 genomes reference using bwa.

However, because of time and space limitations, students only align a portion of the data.

In this task, identify the "raw" sequence data and download the full data set onto the UNC Charlotte cluster. Also, look into whether it is OK for us to align the data and then distribute it as an freely available data set for IGB user outreach and training.

Make a note in the Comments indicating:

• Where you obtained the data (add links)
• Where you put it on the cluster (indicate file path)

Any additional notes should be added to a google doc. Ask Dr. Loraine to create a starter doc for this.