On master, there is an error on startup:

org.osgi.framework.BundleException: Unable to resolve htsjdk-igb [26](R 26.0): missing requirement [htsjdk-igb [26](R 26.0)] osgi.wiring.package; (&(osgi.wiring.package=org.apache.commons.jexl2)(version>=2.1.0)(Unable to render embedded object: File ( [[htsjdk-igb [26](R 26.0)] osgi.wiring.package; (&(osgi.wiring.package=org.apache.commons.jexl2)(version>=2.1.0)() not found.(version>=3.0.0)))]
at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:4114) ~[igb_exe.jar:na]
at org.apache.felix.framework.Felix.startBundle(Felix.java:2111) ~[igb_exe.jar:na]
at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:977) ~[igb_exe.jar:na]
at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:964) ~[igb_exe.jar:na]
at com.affymetrix.main.OSGiHandler.loadBundles(OSGiHandler.java:83) [igb_exe.jar:na]
at com.affymetrix.main.OSGiHandler.startOSGi(OSGiHandler.java:63) [igb_exe.jar:na]
at com.affymetrix.main.Main.main(Main.java:30) [igb_exe.jar:na]
15:36:02.340 [main] ERROR com.affymetrix.main.OSGiHandler - Error starting bundle htsjdk-igb:2.16.2

I have seen the error when running master branch in Netbeans and from command line. Note you will not see the error in the IGB Help menu console because it happens before GUI is started.

Looks like it could be a quick fix – possibly due import statement missing a package.

If the missing package is not necessary for anything, I'd prefer to remove it as a dependency from the htsjdk-igb bundle. If this is practical to do, that (of course) requires making changes to our htsjdk-igb branch, which is fine. We can increment the version and deploy onto our nexus repository as usual.