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  1. IGB
  2. IGBF-1653

Property Search in Advanced Search tab throws IllegalArgumentException

        Details

          Description

          Investigate and determine why this happens.
          Find out if it affects released branch 9.0.2 (get from bioviz.org).
          Read user's guide Advanced Search documentation as background.

          To repeat:

          1) Click Advanced Search tab
          2) Select PropertySearch, don't enter query string (leave text blank)
          3) Click Search icon (magnifying glass button on right of text entry)

          Observe exception:

          14:51:37.494 ERROR c.a.genometry.thread.CThreadWorker - Comparison method violates its general contract!
          java.lang.IllegalArgumentException: Comparison method violates its general contract!
          at java.util.TimSort.mergeHi(TimSort.java:899) ~[na:1.8.0_192]
          at java.util.TimSort.mergeAt(TimSort.java:516) ~[na:1.8.0_192]
          at java.util.TimSort.mergeCollapse(TimSort.java:441) ~[na:1.8.0_192]
          at java.util.TimSort.sort(TimSort.java:245) ~[na:1.8.0_192]
          at java.util.Arrays.sort(Arrays.java:1512) ~[na:1.8.0_192]
          at java.util.ArrayList.sort(ArrayList.java:1462) ~[na:1.8.0_192]
          at java.util.Collections.sort(Collections.java:175) ~[na:1.8.0_192]
          at com.affymetrix.igb.searchmodeidorprops.SearchModeIDOrProps.findLocalSyms(SearchModeIDOrProps.java:180) ~[na:na]
          at com.affymetrix.igb.searchmodeidorprops.SearchModeIDOrProps.search(SearchModeIDOrProps.java:105) ~[na:na]
          at com.affymetrix.igb.searchmodeidorprops.SearchModeID.search(SearchModeID.java:86) ~[na:na]
          at com.affymetrix.igb.keywordsearch.KeyWordSearch.search(KeyWordSearch.java:65) ~[na:na]
          at com.affymetrix.igb.search.SearchView$SearchAction$1.runInBackground(SearchView.java:175) ~[na:na]
          at com.affymetrix.igb.search.SearchView$SearchAction$1.runInBackground(SearchView.java:155) ~[na:na]
          at com.affymetrix.genometry.thread.CThreadWorker.doInBackground(CThreadWorker.java:73) ~[na:na]
          at javax.swing.SwingWorker$1.call(SwingWorker.java:295) [na:1.8.0_192]
          at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_192]
          at javax.swing.SwingWorker.run(SwingWorker.java:334) [na:1.8.0_192]
          at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [na:1.8.0_192]
          at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [na:1.8.0_192]
          at java.lang.Thread.run(Thread.java:748) [na:1.8.0_192]

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              Bug - A problem which impairs or prevents the functions of the product. IGBF-2011 Re-opened: Property Search in Advanced Search tab throws IllegalArgumentException

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

                Activity

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                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                Re-opening because observed bug in 9.1.0

                Show
                ann.loraine Ann Loraine added a comment - Re-opening because observed bug in 9.1.0
                Hide
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                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment -

                Tutorial to handle this issue.
                https://www.youtube.com/watch?v=Enwbh6wpnYs

                Show
                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment - Tutorial to handle this issue. https://www.youtube.com/watch?v=Enwbh6wpnYs
                Hide
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                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment -

                This error occurs when the comparator is not correctly implemented.

                Show
                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment - This error occurs when the comparator is not correctly implemented.
                Hide
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                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment -

                I checked out to release-9.0.2 branch.

                I followed the exact steps:
                1. Go to Advanced Search
                2. Select properties
                3. Don't enter anything in the search field.
                4. Click the search button.

                I am not getting any error messages.
                I checked in the command line and also in Help-Console.

                Show
                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment - I checked out to release-9.0.2 branch. I followed the exact steps: 1. Go to Advanced Search 2. Select properties 3. Don't enter anything in the search field. 4. Click the search button. I am not getting any error messages. I checked in the command line and also in Help-Console.

                  People

                  • Assignee:
                    svallapu Sai Charan Reddy Vallapureddy (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: