Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.0 Major Release
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Labels:
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Story Points:2
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Epic Link:
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Sprint:Summer 2019 Sprint 8, Summer 2019 Sprint 9, Summer 2019 Sprint 10, Summer 2019 Sprint 11
Description
For details see:
Investigate bundle resolution error involving htsjdk-igb
https://jira.transvar.org/browse/IGBF-1627
This requires understanding OSGi and how bundle dependencies get resolved during bundle installation and activation.
Also, review how we made htsjdk-igb bundle in the first place by looking at linked Jira issues.
Probably we have to make some changes to how we generate that bundle?
Potentially useful resources:
- Wrapping libraries to OSGi bundles https://bnd.bndtools.org/chapters/390-wrapping.html
- Playing with Apache karaf - tool you can use to test installing bundles (note our bundle is a library and doesn't have an "activate" method, which is a bit like a "main" method in Java application) https://www.javaindeed.com/playing-with-apache-karaf-console/
Please add more as you work on this.
When done, please write up a short, plain English description of what you did to fix the problem. (This can be a useful case study to introduce devs to OSGi in IGB.)
*
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1531 [ 17617 ] |
| Rank | Ranked higher |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Sai Charan Reddy Vallapureddy [ svallapu ] |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Attachment | jexl_Missing_Requirement.JPG [ 14335 ] | |
| Attachment | MissingRequirements.JPG [ 14336 ] | |
| Attachment | MissingRequirements_afterInstallingCompress.JPG [ 14337 ] |
| Attachment | htsjdk_success.JPG [ 14338 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Sai Charan Reddy Vallapureddy [ svallapu ] |
| Sprint | Summer 2019 Sprint 8 [ 67 ] | Summer 2019 Sprint 8, Summer 2019 Sprint 9 [ 67, 68 ] |
| Rank | Ranked higher |
| Status | Needs 1st Level Review [ 10005 ] | Open [ 1 ] |
| Assignee | Sai Charan Reddy Vallapureddy [ svallapu ] |
| Rank | Ranked higher |
| Status | Open [ 1 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Sai Charan Reddy Vallapureddy [ svallapu ] |
| Status | Needs 1st Level Review [ 10005 ] | In Progress [ 3 ] |
| Assignee | Sai Charan Reddy Vallapureddy [ svallapu ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Sai Charan Reddy Vallapureddy [ svallapu ] |
| Story Points | 1 | 2 |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Reviewing [ 10301 ] |
| Attachment | htsjdktxt.txt [ 14347 ] |
| Status | Reviewing [ 10301 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Reviewing [ 10301 ] |
| Status | Reviewing [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Ann Loraine [ aloraine ] | Sai Charan Reddy Vallapureddy [ svallapu ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Sai Charan Reddy Vallapureddy [ svallapu ] |
| Status | Pull Request Submitted [ 10101 ] | Needs Testing [ 10002 ] |
| Sprint | Summer 2019 Sprint 8, Summer 2019 Sprint 9 [ 67, 68 ] | Summer 2019 Sprint 8, Summer 2019 Sprint 9, Summer 2019 Sprint 10 [ 67, 68, 69 ] |
| Rank | Ranked higher |
| Sprint | Summer 2019 Sprint 8, Summer 2019 Sprint 9, Summer 2019 Sprint 10 [ 67, 68, 69 ] | Summer 2019 Sprint 8, Summer 2019 Sprint 9, Summer 2019 Sprint 10, Summer 2019 Sprint 11 [ 67, 68, 69, 70 ] |
| Rank | Ranked higher |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
| Assignee | Noor Zahara [ noor91zahara ] |
| Assignee | Noor Zahara [ noor91zahara ] | Sai Charan Reddy Vallapureddy [ svallapu ] |
| Resolution | Done [ 10000 ] | |
| Status | Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Workflow | Loraine Lab Workflow [ 18489 ] | Fall 2019 Workflow Update [ 20191 ] |
| Workflow | Fall 2019 Workflow Update [ 20191 ] | Revised Fall 2019 Workflow Update [ 22328 ] |