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  1. IGB
  2. IGBF-1791

Investigate new file format for personal genome visualization

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Situation: Various personal genomics providers (23andMe and Ancestry) provide raw data in slightly different formats. The current IGB app transforms this data into the BED format, which is viewable by IGB. However, this is not optimal as BED format has many unused fields that are filled with default values.

          Task: Investigate what would be the optimal data format for 23andMe or Ancestry data. Most likely we will need to create a new format.

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              relates to

              Epic - Created by JIRA Software - do not edit or delete. Issue type for a big user story that needs to be broken down. IGBF-2246 Create new App to show results from personal genotyping platforms

              • Major - Major loss of function.
              • Closed

                Activity

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                nfreese Nowlan Freese added a comment -

                Take a look at the VCF file format . May be useful if we do not need to include all of the columns.

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                nfreese Nowlan Freese added a comment - Take a look at the VCF file format . May be useful if we do not need to include all of the columns.
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                ann.loraine Ann Loraine added a comment -

                Removing attachments to reduce space required on jira host.

                Downloaded to my local in case we need to save them.

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                ann.loraine Ann Loraine added a comment - Removing attachments to reduce space required on jira host. Downloaded to my local in case we need to save them.

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
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                    • Created:
                      Updated:
                      Resolved: