Details
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Type: Improvement
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:4
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Epic Link:
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Sprint:Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct, Fall 5 : 14 Oct to 25 Oct, Fall 6 : 28 Oct to 8 Nov, Fall 7 : 11 Nov to 22 Nov
Description
Set up test EC2 instance for galaxy project using ansible.
Attachments
Issue Links
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IGBF-32 Don't replace spaces with underscore characters when viewing files from Galaxy.
- Closed
Activity
Noor Zahara (Inactive)
created issue -
Noor Zahara (Inactive)
made changes -
Sameer Shanbhag (Inactive)
made changes -
Status | Open [ 1 ] | In Progress [ 3 ] |
Sameer Shanbhag (Inactive)
made changes -
Issue Type | Task [ 3 ] | Improvement [ 4 ] |
Story Points | 4 | |
Sprint | Summer 2019 Sprint 12 [ 71 ] | |
Labels | Advanced |
Sameer Shanbhag (Inactive)
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Ann Loraine
made changes -
Status | Needs 1st Level Review [ 10005 ] | Open [ 1 ] |
Ann Loraine
made changes -
Epic Link | IGBF-1880 [ 17970 ] |
Ann Loraine
made changes -
Summary | EC2 Instance set up - Galaxy project | Deploy Galaxy on EC2 instance for testing |
Ann Loraine
made changes -
Summary | Deploy Galaxy on EC2 instance for testing | Deploy Galaxy on EC2 instance |
Ann Loraine
made changes -
Sprint | Summer 2019 Sprint 12 [ 71 ] | Summer 2019 Sprint 12, Fall 2019 Sprint 1 [ 71, 72 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Workflow | Loraine Lab Workflow [ 18674 ] | Fall 2019 Workflow Update [ 19015 ] |
Sameer Shanbhag (Inactive)
made changes -
Status | Open [ 1 ] | To-Do [ 10305 ] |
Sameer Shanbhag (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Ann Loraine
made changes -
Ann Loraine
made changes -
Ann Loraine
made changes -
Sprint | Summer 2019 Sprint 12, Fall 2019 Sprint 1 [ 71, 72 ] | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2 [ 71, 72, 73 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Sameer Shanbhag (Inactive)
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Sameer Shanbhag (Inactive)
made changes -
Assignee | Sameer Shanbhag [ sameer ] |
Ann Loraine
made changes -
Sprint | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2 [ 71, 72, 73 ] | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 4 [ 71, 72, 73, 74 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3 [ 71, 72, 73, 74 ] | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 2019 Sprint 4 [ 71, 72, 73, 74, 75 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct [ 71, 72, 73, 74, 75 ] | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct, Fall 5 : 14 Oct to 25 Oct [ 71, 72, 73, 74, 75, 76 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Workflow | Fall 2019 Workflow Update [ 19015 ] | Revised Fall 2019 Workflow Update [ 21156 ] |
Ann Loraine
made changes -
Sprint | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct, Fall 5 : 14 Oct to 25 Oct [ 71, 72, 73, 74, 75, 76 ] | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct, Fall 5 : 14 Oct to 25 Oct, Fall 6 : 28 Oct to 8 Nov [ 71, 72, 73, 74, 75, 76, 77 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct, Fall 5 : 14 Oct to 25 Oct, Fall 6 : 28 Oct to 8 Nov [ 71, 72, 73, 74, 75, 76, 77 ] | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct, Fall 5 : 14 Oct to 25 Oct, Fall 6 : 28 Oct to 8 Nov, Fall 7 : 11 Nov to 22 Nov [ 71, 72, 73, 74, 75, 76, 77, 78 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct, Fall 5 : 14 Oct to 25 Oct, Fall 6 : 28 Oct to 8 Nov, Fall 7 : 11 Nov to 22 Nov [ 71, 72, 73, 74, 75, 76, 77, 78 ] | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct, Fall 5 : 14 Oct to 25 Oct, Fall 6 : 28 Oct to 8 Nov, Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec [ 71, 72, 73, 74, 75, 76, 77, 78, 79 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct, Fall 5 : 14 Oct to 25 Oct, Fall 6 : 28 Oct to 8 Nov, Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec [ 71, 72, 73, 74, 75, 76, 77, 78, 79 ] | Summer 2019 Sprint 12, Fall 2019 Sprint 1, Fall 2019 Sprint 2, Fall 2019 Sprint 3, Fall 4 : 30 Sep to 11 Oct, Fall 5 : 14 Oct to 25 Oct, Fall 6 : 28 Oct to 8 Nov, Fall 7 : 11 Nov to 22 Nov [ 71, 72, 73, 74, 75, 76, 77, 78 ] |
Ann Loraine
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Ann Loraine
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Ann Loraine
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Ann Loraine
made changes -
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] | Sameer Shanbhag [ sameer ] |
[~aloraine]
The setup for Galaxy instance is complete (Currently uses Noor Zahara's Fork | Can be used for testing changes made by her):
Instance can be found : https://18.204.227.154/
I had a domain lying around so i used it to point to the same instance so it can be visited at : https://mapcoloring.me/
Documentation on how to setup the instance : https://galaxyproject.github.io/training-material/topics/admin/tutorials/ansible-galaxy/tutorial.html
Info:
Instance will show that the website is not secure as the website is using certbot which creates fake SSL Certificates with "well-known" Algorithm which is used by the Galaxy team to get you started with basic level of SSL configuration. We can add our own SSL certificate and remove the certbot when we deploy it on a production EC2 and a Production ready domain.
Some Notes:
The installation looks straightforward but due to limited control on the EC2 there are some "commands" that we have to run manually which are not available in the Documentation.