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  1. IGB
  2. IGBF-2133

Implement CyVerse metadata bridge with IGB bookmarks

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Critical
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          5
        • Epic Link:
        • Sprint:
          Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 28 Feb

          Description

          Situation: Until the new endpoints have been finished in IGB, we will try to use the existing IGB bookmarks endpoint for receiving metadata from IGB-CyVerse.

          Task: Investigate and implement code changes so that the metadata from IGB-CyVerse (genome version, foreground, background) is sent and processed by IGB Bookmarks. The end result should be that when a user clicks on View in IGB in IGB-CyVerse, the genome version, foreground and background are sent to IGB. IGB loads the specified genome version, loads the data track, and colors the foreground and background.

          Note: Look at IGBF-1635 for important files.

            Attachments

              Issue Links

              is blocked by

              Task - A task that needs to be done. IGBF-2272 Update BioViz Connect Metadata Bridge

              • Major - Major loss of function.
              • Closed
              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1635 Develop a strategy to refactor REST endpoint code used by Galaxy/BAR/CyVerse (maybe AppStore)

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1482 [ 17568 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-1635 [ IGBF-1635 ]
                nfreese Nowlan Freese made changes -
                Rank Ranked higher
                karthik Karthik Raveendran made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                karthik Karthik Raveendran made changes -
                Assignee Karthik Raveendran [ karthik ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov [ 78 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec [ 78, 79 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec [ 78, 79 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec [ 78, 79, 80 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                karthik Karthik Raveendran made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                karthik Karthik Raveendran made changes -
                Assignee Karthik Raveendran [ karthik ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec [ 78, 79, 80 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 6 Jan to 17 Jan [ 78, 79, 80, 84 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan [ 78, 79, 80, 84 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan [ 78, 79, 80, 84, 85 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan [ 78, 79, 80, 84, 85 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb [ 78, 79, 80, 84, 85, 86 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Karthik Raveendran [ karthik ]
                karthik Karthik Raveendran made changes -
                Assignee Karthik Raveendran [ karthik ] Nowlan Freese [ nfreese ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb [ 78, 79, 80, 84, 85, 86 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec, Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan, Spring 2 : 20 Jan to 31 Jan, Spring 3 : 3 Feb to 14 Feb, Spring 3 : 17 Feb to 21 Feb [ 78, 79, 80, 84, 85, 86, 87 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Karthik Raveendran [ karthik ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Assignee Karthik Raveendran [ karthik ]
                nfreese Nowlan Freese made changes -
                Link This issue is blocked by IGBF-2272 [ IGBF-2272 ]
                nfreese Nowlan Freese made changes -
                Assignee Chaitanya Kintali [ chaitanya ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Assignee Chaitanya Kintali [ chaitanya ] Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Assignee Ann Loraine [ aloraine ]
                chaitanya Chaitanya Kintali (Inactive) made changes -
                Assignee Chaitanya Kintali [ chaitanya ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                nfreese Nowlan Freese made changes -
                Assignee Chaitanya Kintali [ chaitanya ] Nowlan Freese [ nfreese ]

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated:
                      Resolved: