Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:3
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Epic Link:
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Sprint:Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10
Description
Implement methods in genotyping SymLoader.
Write javadoc comments and check format by compiling javadocs.
- First, create unit tests for methods (may require some re-factoring)
- Start implementing methods, updating and adding unit tests as needed
- Create test files as needed using example file as a start.
- Note: example file is a "real" file typical of what the SymLoader will encounter in the wild. Create simpler examples files to test specific things, e.g., format flaws.
- Note: will likely need to mock some of the classes, notably GenomeVersion. Look through other testing code for ideas on how to do this.
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link |
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| Rank | Ranked higher |
| Summary | Implement SymLoader using test-first programming | Implement TwentyThreeAndMeSymLoader using test-first programming |
| Description |
Implement methods in genotyping SymLoader.
Write javadoc comments and check format by compiling javadocs. * Create unit tests for each method (may require some re-factoring) * Implement methods in genotyping SymLoader * Create test files as needed using example file * Will need to mock some of the classes, notably GenomeVersion Suggestion: Create simpler examples files to test specific things, e.g., format flaws. |
Implement methods in genotyping SymLoader.
Write javadoc comments and check format by compiling javadocs. * First, create unit tests for methods (may require some re-factoring) * Start implementing methods, updating and adding unit tests as needed * Create test files as needed using example file as a start. * Note: example file is a "real" file typical of what the SymLoader will encounter in the wild. Create simpler examples files to test specific things, e.g., format flaws. * Note: will likely need to mock some of the classes, notably GenomeVersion. Look through other testing code for ideas on how to do this. |
| Story Points | 2 | 3 |
| Sprint | Spring 3 : 17 Feb to 28 Feb [ 87 ] | Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar [ 87, 89 ] |
| Rank | Ranked higher |
| Sprint | Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar [ 87, 89 ] | Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar [ 87, 89, 90 ] |
| Rank | Ranked higher |
| Assignee | Srishti Tiwari [ stiwari8 ] |
| Sprint | Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar [ 87, 89, 90 ] | Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10 [ 87, 89, 90, 91 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Srishti Tiwari [ stiwari8 ] |
PR is merged. Moving to Done.
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Hi Dr. Loraine,
As the changes were related, the changes in branch
IGBF-2253contain changes forIGBF-2252as well. Kindly review:https://bitbucket.org/srishtitiwari/integrated-genome-browser/commits/36a86308d9f7e21036a2a50b42383f7538e54a52