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  1. IGB
  2. IGBF-2274

Create genome dashboard showing genome pictures for quickly going to a genome

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      2
    • Sprint:
      Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May

      Description

      Let's create a single page app (or even simpler) that shows images representing genomes.

      When a user clicks on an image, IGB (if it is running) will load the genome.

      See:

      https://wiki.transvar.org/display/igbman/Controlling+IGB+using+IGB+Links

      Example link:

      http://localhost:7085/UnibrowControl?version=A_thaliana_Jun_2009

      Valid versions are available in the first first column from:
      http://igbquickload.org/quickload/contents.txt

      Please add to the BioViz code base.

      Note that if you want to use other versions of javascript or bootstrap libraries than are used elsewhere on the site, that's fine.

      Also, more than one person is welcome to work on this.

      Karthik Raveendran
      Sameer Shanbhag

        Attachments

          Activity

          ann.loraine Ann Loraine created issue -
          ann.loraine Ann Loraine made changes -
          Field Original Value New Value
          Epic Link IGBF-1765 [ 17855 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          ann.loraine Ann Loraine made changes -
          Attachment BioVizGenomeDashboard-Design1.pptx [ 14651 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          nfreese Nowlan Freese made changes -
          Sprint Spring 3 : 17 Feb to 28 Feb [ 87 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar [ 87, 89 ]
          nfreese Nowlan Freese made changes -
          Rank Ranked higher
          nfreese Nowlan Freese made changes -
          Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar [ 87, 89 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar [ 87, 89, 90 ]
          nfreese Nowlan Freese made changes -
          Rank Ranked higher
          nfreese Nowlan Freese made changes -
          Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar [ 87, 89, 90 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10 [ 87, 89, 90, 91 ]
          nfreese Nowlan Freese made changes -
          Rank Ranked higher
          ann.loraine Ann Loraine made changes -
          Assignee Sameer Shanbhag [ sameer ]
          ann.loraine Ann Loraine made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          ann.loraine Ann Loraine made changes -
          Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10 [ 87, 89, 90, 91 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr [ 87, 89, 90, 91, 92 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          ann.loraine Ann Loraine made changes -
          Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr [ 87, 89, 90, 91, 92 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May [ 87, 89, 90, 91, 92, 93 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          ann.loraine Ann Loraine made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          ann.loraine Ann Loraine made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          ann.loraine Ann Loraine made changes -
          Assignee Sameer Shanbhag [ sameer ] Ann Loraine [ aloraine ]
          ann.loraine Ann Loraine made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          ann.loraine Ann Loraine made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          ann.loraine Ann Loraine made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          ann.loraine Ann Loraine made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          ann.loraine Ann Loraine made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          ann.loraine Ann Loraine made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
          ann.loraine Ann Loraine made changes -
          Resolution Done [ 10000 ]
          Status Closed [ 6 ] To-Do [ 10305 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ] Sameer Shanbhag [ sameer ]
          sameer Sameer Shanbhag (Inactive) made changes -
          Status To-Do [ 10305 ] Pull Request Submitted [ 10101 ]
          sameer Sameer Shanbhag (Inactive) made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          sameer Sameer Shanbhag (Inactive) made changes -
          Status Reviewing Pull Request [ 10303 ] Pull Request Submitted [ 10101 ]
          sameer Sameer Shanbhag (Inactive) made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          sameer Sameer Shanbhag (Inactive) made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          ann.loraine Ann Loraine made changes -
          Sprint Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May [ 87, 89, 90, 91, 92, 93 ] Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar, Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May [ 87, 89, 90, 91, 92, 93, 94 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          ann.loraine Ann Loraine made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          ann.loraine Ann Loraine made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

            People

            • Assignee:
              sameer Sameer Shanbhag (Inactive)
              Reporter:
              ann.loraine Ann Loraine
            • Votes:
              0 Vote for this issue
              Watchers:
              3 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: