Details
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Type:
Improvement
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.25
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Epic Link:
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Sprint:Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun
Description
Genome Dashboard has a very nice feature that lets me open a list of all the available genome versions for a species, including the latest one.
Next to the name of some – but not all – genome versions listed there, I see an "i" (for "information") symbol.
This is great, but it could be improved!
First, it's a bit confusing as to why sometimes there is an "i" and sometimes not.
Also, it is not clear how I'm supposed to use the "i" graphic. If I click it, it does not show me information (as I expected) but instead either displays an error message or opens a new genome in IGB. However, if I hover the mouse over it, a word-balloon-like graphic appears with the "tail" of the balloon pointing to the middle of the genome name, not the "i". So that is a bit confusing. The first time I saw it, I wondered what I had done to make it appear because it was not connected visually to the "i" graphic.
Can you make the following changes?
1) Change the "word balloon" graphic so that the pointy end points directly at the "i". The word should be centered on top of the "i" to make it clear which part of the UI has triggered its appearance.
2) If the user clicks the "i", display the the word balloon graphic.
3) If the user clicks anywhere else on the menu, open the requested genome in IGB.
4) At the top of the word balloon, display in different color font the label "Names for this genome version include: " and then list the names (synonyms) starting with the IGB name.
5) List each name on its own line to improve readability. Don't worry if this makes the word balloon too tall. We will do a better job of curating all the names - many of them are obsolete and can be safely deleted from the synonyms.txt file on the master IGB branch.
Let's change this so that there is always an "i" (for "information") next to every genome name.
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
The tooltip now displays the synonyms for all genome versions appropriately, one on each line. The pointer of the tooltip points to the info icon. There's an information icon next to every genome version name.
However, I observed that only the latest versions were getting loaded in IGB, even when I clicked on a particular older version. Sameer Shanbhag can you please look into this?
Good Catch Shamika Gajanan Kulkarni !!
Changelog:
- [FIX] Open the version selected on Genome Dashboard on IGB
Commit:
Doing it now.
Please also do this:
4) At the top of the word balloon, display in different color font the label "Names for this genome version include: " and then list the names (synonyms) starting with the IGB name.
Always include the IGB genome version name on the list of names and so there is no need to show text "No Synonyms found"
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
Changelog:
- Added "Names for this genome version include: " at the top of the info balloon
- Included IGB genome version name on the list of names instead of "No Synonyms found"
Commits:
- https://bitbucket.org/sshanbh1/genome-dashboard/commits/3b434b3203fd26f6cecf1be2ff2558bbcb67305d
- https://bitbucket.org/sshanbh1/genome-dashboard/commits/26e7e40f01d45d3d6405e0bb1886100ddc7ce7ae
cc: Prof. [~aloraine] and Shamika Gajanan Kulkarni
| Sprint | Spring 8 : 24 Apr to 8 May [ 93 ] | Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May [ 93, 94 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Sameer Shanbhag [ sameer ] | Shamika Gajanan Kulkarni [ shamika ] |
Not done:
2) If the user clicks the "i", display the the word balloon graphic.
| Assignee | Shamika Gajanan Kulkarni [ shamika ] |
| Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
The genome browser deployed on https://www.bioviz.org/genome-dashboard reflects these changes. As mentioned before, the tooltip displays the synonyms for all genome versions appropriately, one on each line.
The pointer of the tooltip points to the info icon.
There's an information icon next to every genome version name.
The recent as well as older genome versions are loading in IGB appropriately as requested.
At the top of the info balloon, the label "Names for this genome version include:" is displayed in a different font color. The list of synonyms start with the Genome version name.
Even though, no synonyms exist, the IGB Genome version name is displayed in the list of names.
cc: Prof. [~aloraine]
Please note: Hovering over (not clicking) the information icon displays the word balloon graphic. Clicking anywhere else opens the requested genome version in IGB.
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
The header text is not showing for A_gambiae_Oct_2006.
Moving back to "To-Do" as the feature is not fully implemented yet.
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
Whoever works on this next: Please do a quick Zoom with Dr. Loraine so she can explain the needed modifications.
| Sprint | Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May [ 93, 94 ] | Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun [ 93, 94, 95 ] |
| Rank | Ranked higher |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Sameer Shanbhag [ sameer ] |
Change Log:
Commit:
P.S. - Prof. [~aloraine] Could you please deploy the latest changes to the test bioviz site so that I can test it as well as someone else can have a look.