Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 9 : 25 May to 8 Jun
Description
During on-boarding and working on IGBF-1464, both Logan Weidenhammer and Jay Chamma discovered that several tests in the genometry library were running and failing.
This failure only happens on Windows.
For this task, investigate the cause of the problem and propose a solution.
If the solution can be done quickly, go ahead and implement it. Otherwise, make a new ticket to capture all work on the ticket.
Attachments
Activity
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-1531 [ 17617 ] |
Rank | Ranked higher |
Assignee | Ann Loraine [ aloraine ] |
Description |
During on-boarding and working on This failure only happens on Windows. For this task, investigate the cause of the problem and propose a solution. If the solution can be done quickly, go ahead and implement it. Otherwise, make a new ticket to capture all work on the ticket. |
During on-boarding and working on This failure only happens on Windows. For this task, investigate the cause of the problem and propose a solution. If the solution can be done quickly, go ahead and implement it. Otherwise, make a new ticket to capture all work on the ticket. |
Assignee | Chaitanya Kintali [ chaitanya ] |
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Attachment | error - genometry.txt [ 14752 ] |
Comment | [ Sample Error log file ] |
Story Points | 0.5 | 1 |
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
[~aloraine]
It seems that, if IGB is cloned and executed in a folder with space's in its name (ex: C:\sample test) it is causing an issue. Below is the snippet that I found from the error logs.
Running com.affymetrix.genometry.parsers.BpsParserTest
Jun 02, 2020 4:41:22 PM com.affymetrix.genometry.parsers.BpsParserTest testConvertToBps
SEVERE: null
java.io.FileNotFoundException: C:\test%20sample\core\genometry\target\test-classes\data\psl\test1.psl (The system cannot find the path specified)
the files are not getting located and finally throwing IO not found an exception. After Cloning the project to a folder name with no spaces, everything worked fine.
I guess this should be the same behavior with MAC OS as well.