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  1. IGB
  2. IGBF-2414

Investigate: Include bioviz menu bar in genome-dashboard

    Details

    • Type: New Feature
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      The Genome Dashboard currently contains no link to the BioViz home page.

      Let's add a home (house) icon to the top left of the genome dashboard page that points to "/" (the Web site root)

      Note: make sure that the link will work properly regardless of whether the site is actually deployed or what it's domain name is.

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            ann.loraine Ann Loraine created issue -
            ann.loraine Ann Loraine made changes -
            Field Original Value New Value
            Epic Link IGBF-1765 [ 17855 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Comment [ I think I see the problem.

            The menu.html file contains nothing but implied relative links that look like location.html. That is, their location on the network is implied to be the same place (directory) as the file that contains the link.

            So I expect that if a user were to click a link "location.html" when viewing domainname/genome-dashboard, then their client Web browser will ask for domainname/genome-dashboard/location.html.

            That's wrong of course :-)

            I can think of a work-around. There may be others that are better.

            Possibly work-around: Whatever code in app.js that grabs menu.html could parse all the links (all "a href=TEXT.html" tags) where "TEXT" never starts with http or https. It could then prepend the link with the server name and a slash, whatever the server name happens to be. Of course, the node application can't know in advance what the servername is. Only apache knows that, and even apache only knows what the server name because the playbooks add this information to its configuration file. The node app won't be able to read that file, but it might be able to get access to it from environment variables set up by apache when it runs. But I am skeptical that node would even be able to access the environment variables because node runs in a separate process from apache.

            However, when we deploy the node app onto a bioviz host, we could configure the playbooks to edit or create some kind of configuration file that the app could read, find out what the server name is, and then add the server name prefix as needed to the menu.html links.

            If you want to try out these ideas on test.bioviz.org, go for it.

            ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Summary Add "home" icon to top left of genome dashboard Investigate: Include bioviz menu bar in genome-dashboard
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
            ann.loraine Ann Loraine made changes -
            Sprint Spring 9 : 25 May to 8 Jun [ 95 ] Spring 9 : 25 May to 8 Jun, Summer 1: 8 Jun - 19 Jun [ 95, 96 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Story Points 0.25 1
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ] Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Attachment css_diff.png [ 14756 ]
            Attachment html_diff.png [ 14757 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Attachment css_diff.png [ 14756 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Attachment css_diff.png [ 14758 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Story Points 1 2.5
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
            ann.loraine Ann Loraine made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
            ann.loraine Ann Loraine made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Story Points 2.5 3
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ] Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            ann.loraine Ann Loraine made changes -
            Status Post-merge Testing In Progress [ 10003 ] To-Do [ 10305 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ] Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            ann.loraine Ann Loraine made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
            ann.loraine Ann Loraine made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            ann.loraine Ann Loraine made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            ann.loraine Ann Loraine made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Link This issue is blocked by IGBF-2431 [ IGBF-2431 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status Post-merge Testing In Progress [ 10003 ] To-Do [ 10305 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
            ann.loraine Ann Loraine made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ] Philip Badzuh [ pbadzuh ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Assignee Philip Badzuh [ pbadzuh ]
            ann.loraine Ann Loraine made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            gchamma Jay Chamma (Inactive) made changes -
            Assignee Jay Chamma [ gchamma ]
            gchamma Jay Chamma (Inactive) made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            gchamma Jay Chamma (Inactive) made changes -
            Resolution Done [ 10000 ]
            Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
            gchamma Jay Chamma (Inactive) made changes -
            Assignee Jay Chamma [ gchamma ] Philip Badzuh [ pbadzuh ]

              People

              • Assignee:
                pbadzuh Philip Badzuh (Inactive)
                Reporter:
                ann.loraine Ann Loraine
              • Votes:
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                Watchers:
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                Dates

                • Created:
                  Updated:
                  Resolved: