Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Blocker
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Story Points:2
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Epic Link:
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Sprint:Summer 1: 8 Jun - 19 Jun, Summer 2: 22 Jun - 3 Jul
Description
Recently a researcher asked about these quickload instructions from the User's Guide:
He wrote:
Is this method still the easiest way to upload BAM/BED files to IGB Quickload?
The last edit to this page was in Jan 2016. The content may be out of date.
Before we answer the question, we should check that the content is still correct.
To do this, try to follow the instructions to set up a satellite Quickload site on your computer, using the latest tomato genome currently available in IGB. Make note of any problems you encounter. Your test QL site should include a BED and a BAM file, since this is what the researcher asked about. You can get examples from the RNA-Seq quickload site.
Make notes in this ticket about any changes or problems you notice as you do the walk-through. Hopefully everything will work properly! But it not, your observations will help us think of some potential solutions.
If you run into problems, please make a new Jira ticket in the "Teach people to use IGB" epic and link it to this one. Include it in the current sprint.
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