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  1. IGB
  2. IGBF-2481

Edit BioViz Connect Paper based on GigaScience info

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      3
    • Sprint:
      Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug

      Description

      Situation: The BioViz Connect paper was not accepted for review in GigaScience with the following message:

      "After consultation with the Editors and Board we have now assessed your manuscript and regret to inform you that it cannot be accepted for publication in GigaScience. We are now receiving more papers covering workflows and pipelines than we can handle, and our thresholds have had to keep pace and add utility and novelty beyond just being a users guide, as well as demonstrate clear improvements against the state of the art. Unfortunately this doesn't quite meet those thresholds but I hope you find a good home for the work." - Scott Edmunds

      I spoke with Laurie Goodman from GigaScience during the BCC2020 conference. She said that the email from Scott may have been more of a generic response, as they no longer provide precise feedback when they choose not to accept a paper for review. However, I think the paper does need to be edited to better emphasize the novelty (first use of Terrain) and technology.

      Laurie also pointed out that they are wary of accepting papers focused on websites, as those websites may start off free but then move behind a paywall or require creating an account. We need to emphasize that the login is dependent on CyVerse (to see the data) and that we will not create a paywall (funded by NIH - this may be important to mention in the cover letter).

      This Galaxy paper may be a good example to work off of for our paper. However, Laurie mentioned that Galaxy and GigaScience have a collaboration together, which explains why so many Galaxy papers appear in GigaScience.

      Task: Edit the paper to emphasize the novelty (use of Terrain), functionality (useful for all CyVerse and IGB users), technology (add technology stack figure), and security (emphasize how login works through CyVerse - may be worth including login technology figure).

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          Activity

          nfreese Nowlan Freese created issue -
          nfreese Nowlan Freese made changes -
          Field Original Value New Value
          Epic Link IGBF-2376 [ 18533 ]
          nfreese Nowlan Freese made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          ann.loraine Ann Loraine made changes -
          Sprint Summer 4: 14 Jul - 28 Jul [ 99 ] Summer 4: 14 Jul - 28 Jul, Summer 5: 29 Jul - 12 Aug [ 99, 100 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          nfreese Nowlan Freese made changes -
          Status In Progress [ 3 ] To-Do [ 10305 ]
          nfreese Nowlan Freese made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          ann.loraine Ann Loraine made changes -
          Sprint Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug [ 99, 100 ] Summer 4: 14 Jul - 28 Jul, Summer 5: 3 Aug - 14 Aug, Summer 6: 17 Aug - 28 Aug [ 99, 100, 101 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          nfreese Nowlan Freese made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ] Ann Loraine [ aloraine ]
          nfreese Nowlan Freese made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          nfreese Nowlan Freese made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          nfreese Nowlan Freese made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          nfreese Nowlan Freese made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          nfreese Nowlan Freese made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          nfreese Nowlan Freese made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          nfreese Nowlan Freese made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
          nfreese Nowlan Freese made changes -
          Assignee Ann Loraine [ aloraine ] Nowlan Freese [ nfreese ]

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            • Assignee:
              nfreese Nowlan Freese
              Reporter:
              nfreese Nowlan Freese
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                Updated:
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