[~aloraine] Do I need to change pom.xml in top level or pom.xml in genoviz-sdk/genoviz_sdk?

What you need to do (I think?) is make sure that the pom.xml that gets packaged with the library "jar" file includes all the necessary information.

When I try to deploy the Genoviz SDK, I got the following error

[ERROR] Failed to execute goal org.apache.maven.plugins:maven-javadoc-plugin:2.9.1:jar (attach-javadocs) on project genoviz: MavenReportException: Error while creating archive:
[ERROR] Exit code: 1 - /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:90: warning: no @param for tel
[ERROR] public synchronized void addTierEventListener(TierEventListener tel) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:97: warning: no @param for tel
[ERROR] public synchronized void removeTierEventListener(TierEventListener tel) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:104: warning: no @param for evt
[ERROR] public synchronized void notifyTierEventListeners(TierEvent evt) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:258: warning: no @param for mtg
[ERROR] public int indexOf(MapTierGlyph mtg) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:267: warning: no @return
[ERROR] public MapTierGlyph getTierAt(int i) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:319: warning: no @param for toRemove
[ERROR] public void removeTier(MapTierGlyph toRemove) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:398: warning: no @param for otherMap
[ERROR] protected void removeCorrTier(AbstractTieredMap otherMap, MapTierGlyph otherTier) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:398: warning: no @param for otherTier
[ERROR] protected void removeCorrTier(AbstractTieredMap otherMap, MapTierGlyph otherTier) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:431: warning: no @return
[ERROR] public boolean isAbleToPackToMatch() {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:438: warning: no @param for b
[ERROR] public void setAbleToPackToMatch(boolean b) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:450: warning: no @param for otherMap
[ERROR] protected void packToMatch(AbstractTieredMap otherMap, boolean full_repack, boolean stretch_map) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:450: warning: no @param for full_repack
[ERROR] protected void packToMatch(AbstractTieredMap otherMap, boolean full_repack, boolean stretch_map) {
[ERROR] ^
[ERROR] /Users/supreeth/Desktop/AMAZON/IGB_work/Genoviz_SDK/genoviz-sdk/genoviz_sdk/src/main/java/com/affymetrix/genoviz/widget/AbstractTieredMap.java:450: warning: no @param for stretch_map
[ERROR] protected void packToMatch(AbstractTieredMap otherMap, boolean full_repack, boolean stretch_map) {

This error generally comes when the code doesn't meet Javadoc standards as per my research. Please look into this link for more detailed discussion: https://stackoverflow.com/questions/23542876/unable-to-build-maven-project-due-to-javadoc-error

I have tried to comment out the Javadoc requirement then I was able to deploy the Genoviz SDK successfully.

Just checking:

You are just testing right now and have not yet actually deployed the artifact to maven central but instead have only deployed to maven central staging. Is that right?

Please note:

• this ticket is to prepare the artifact, not actually deploy it (testing is totally fine though)
• groupId is going to be org.bioviz, not org.lorainelab
• javadocs are being built and ultimately deployed on bioviz.org already

confirmed: testing is against staging, not maven central

I have made changes to pom.xml. I have changed the id to "OSSRH". Please review it.
Please find the link for the commit: https://bitbucket.org/supreeth27/genoviz-sdk/commits/bcc1e2ca4e7736af40c49d5d967468644e297811
cc: [~aloraine]

Changes requests:

(Note: Some of these may already be done in your branch.)

• artifactID for the tutorial should be "genoviz-tutorial"
• artifactID for the genoviz library should be "genoviz-sdk"

• artifactID for the genoviz library is "genoviz-sdk"
• artifactID for the genoviz module is "genoviz"
• artifactID for the genoviz tutorial module is "genovizTutorial"

Let me know if this is fine or I need to make changes for these artifacts. I believe I need to make a change for genoviz tutorial module only.
cc: [~aloraine]

This is fine. Please submit PR when ready. Thank you!

Please find the link for the pull request: https://bitbucket.org/lorainelab/genoviz-sdk/pull-requests/22/igbf-2557-changes-in-pomxml-for-publishing

Merged and then reverted due to Loraine not being able to write to maven central.