Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:2
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Epic Link:
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Sprint:Fall 3: Oct 12 - Oct 23, Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20
Description
Due to some changes in Apple OS security model, we need to start requesting notarization of our IGB installer.
To do this, we need to create a new Docker image with the latest Install4J software - version 8.0.
For this task, re-create the Docker image (lorainelab/igb-maven-install4j) with Install4J version 8 installed.
Do not delete the older docker images. Instead, upload the new image using a new tag:
- I4J8-jre-1.8.0_241
To do this, you need to modify the docker file we use to create the image. It is version-controlled here:
https://bitbucket.org/lorainelab/integrated-genome-browser-docker/src/master/
Attachments
Issue Links
- relates to
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IGBF-3104 Investigate IGB crash on MacOS
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- Closed
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- Closed
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- Closed
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- Closed
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IGBF-1207 Investigate & document how run Dockerized IGB build environment under AWS for developing new pipeline configurations
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- Closed
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- Closed
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Sprint | Fall 3: Oct 12 - Oct 23 [ 106 ] | |
| Labels | Advanced |
| Assignee | Philip Badzuh [ pbadzuh ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
| Sprint | Fall 3: Oct 12 - Oct 23 [ 106 ] | Fall 3: Oct 12 - Oct 23, Fall 4 Oct 26 - Nov 6 [ 106, 107 ] |
| Rank | Ranked higher |
In debugging the failing maven build process, I noticed an [Info] logging statement:
"Your license key is only valid for a previous major release of install4j. Please run the install4j GUI to enter a valid license key."
[~aloraine], how can I go about getting an updated license?
| Comment | [ Please search the Jira issues for references to install4J license key, upgrades, etc. This may give us the contact email for requesting the updated license. ] |
I have got the new key. Sending it separately.
Please note: I am adding the new key on a branch. Details coming separately.
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
Please see the additional required changes at the branch below:
https://bitbucket.org/pbadzuh/igb_pbdev/branch/IGBF-2569#diff
Notes:
- The IGB installers can be generated using a new docker compose file.
- I have added documentation to the README file of the branch linked to in my first comment.
- The new image has been pushed to docker hub.
- The bitbucket pipelines run successfully. Don't forget to update your repository variable for the install4j license.
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
- I have updated the docker compose documentation to include debugging tips such as how to interact with a running docker container.
- I have also brought back the igb_7.install4j configuration file for reference and for use with older releases. Note that install4j licenses are specific to major releases of install4j.
A request:
- Please change the name of newly added file distribution/igb_8.install4j to distribution/install4jv8_config.xml
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
Sure, I have updated my branch to include that change:
https://bitbucket.org/pbadzuh/igb_pbdev/branch/IGBF-2569#diff
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
Thank you! Please submit a PR when ready.
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Both are now merged.
Still to-do: Modify team repository to use the new information for Install4J.
| Sprint | Fall 3: Oct 12 - Oct 23, Fall 4 Oct 26 - Nov 6 [ 106, 107 ] | Fall 3: Oct 12 - Oct 23, Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20 [ 106, 107, 108 ] |
| Rank | Ranked higher |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Noor Zahara [ noor91zahara ] |
I pulled the latest changes into my master branch and changed the install 4j license password.
After the pipeline ran successfully, only .jar file got created under downloads section.
Philip Badzuh - Is there something I am missing?
| Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
| Assignee | Noor Zahara [ noor91zahara ] | Philip Badzuh [ pbadzuh ] |
Noor Zahara, which pipeline did you run? If you ran the 'default' pipeline, that one only outputs a jar file. Try running the 'IGBF-*' pipeline, if you haven't already.
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Philip Badzuh [ pbadzuh ] | Noor Zahara [ noor91zahara ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
I guess I had previously tried running default.
Working as expected.
| Assignee | Noor Zahara [ noor91zahara ] | Philip Badzuh [ pbadzuh ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Please see the changes at the branch below:
https://bitbucket.org/pbadzuh/igb-docker_pbdev/branch/IGBF-2569#diff
The docker image builds, but overall functionality/pipeline integration has not yet been tested.