Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-2569

Create a new docker image with latest version of install4J

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Fall 3: Oct 12 - Oct 23, Fall 4 Oct 26 - Nov 6, Fall 5 Nov 9 - Nov 20

          Description

          Due to some changes in Apple OS security model, we need to start requesting notarization of our IGB installer.

          To do this, we need to create a new Docker image with the latest Install4J software - version 8.0.

          For this task, re-create the Docker image (lorainelab/igb-maven-install4j) with Install4J version 8 installed.

          Do not delete the older docker images. Instead, upload the new image using a new tag:

          • I4J8-jre-1.8.0_241

          To do this, you need to modify the docker file we use to create the image. It is version-controlled here:

          https://bitbucket.org/lorainelab/integrated-genome-browser-docker/src/master/

            Attachments

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-3104 Investigate IGB crash on MacOS

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3118 Create new JRE bundle for Windows installer

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3124 Create new JRE bundle for Linux installer

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-2568 Investigate: Mac user cannot install IGB: cannot be scanned (CLONE)

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

              New Feature - A new feature of the product, which has yet to be developed. IGBF-1207 Investigate & document how run Dockerized IGB build environment under AWS for developing new pipeline configurations

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2280 Update IGB docker image to use latest JDK 1.8 - release 241

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3113 Make new Docker image with version 9 Install4J and Zulu JDKs to build IGB

              • Major - Major loss of function.
              • Closed

                Activity

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                pbadzuh Philip Badzuh (Inactive) added a comment - - edited

                Please see the changes at the branch below:
                https://bitbucket.org/pbadzuh/igb-docker_pbdev/branch/IGBF-2569#diff
                The docker image builds, but overall functionality/pipeline integration has not yet been tested.

                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - - edited Please see the changes at the branch below: https://bitbucket.org/pbadzuh/igb-docker_pbdev/branch/IGBF-2569#diff The docker image builds, but overall functionality/pipeline integration has not yet been tested.
                Hide
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                pbadzuh Philip Badzuh (Inactive) added a comment -

                In debugging the failing maven build process, I noticed an [Info] logging statement:
                "Your license key is only valid for a previous major release of install4j. Please run the install4j GUI to enter a valid license key."
                [~aloraine], how can I go about getting an updated license?

                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - In debugging the failing maven build process, I noticed an [Info] logging statement: "Your license key is only valid for a previous major release of install4j. Please run the install4j GUI to enter a valid license key." [~aloraine] , how can I go about getting an updated license?
                Hide
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                ann.loraine Ann Loraine added a comment -

                I have got the new key. Sending it separately.

                Show
                ann.loraine Ann Loraine added a comment - I have got the new key. Sending it separately.
                Hide
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                ann.loraine Ann Loraine added a comment - - edited

                Please note: I am adding the new key on a branch. Details coming separately.

                Show
                ann.loraine Ann Loraine added a comment - - edited Please note: I am adding the new key on a branch. Details coming separately.
                Hide
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                pbadzuh Philip Badzuh (Inactive) added a comment - - edited

                Please see the additional required changes at the branch below:

                https://bitbucket.org/pbadzuh/igb_pbdev/branch/IGBF-2569#diff

                Notes:

                • The IGB installers can be generated using a new docker compose file.
                • I have added documentation to the README file of the branch linked to in my first comment.
                • The new image has been pushed to docker hub.
                • The bitbucket pipelines run successfully. Don't forget to update your repository variable for the install4j license.
                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - - edited Please see the additional required changes at the branch below: https://bitbucket.org/pbadzuh/igb_pbdev/branch/IGBF-2569#diff Notes: The IGB installers can be generated using a new docker compose file. I have added documentation to the README file of the branch linked to in my first comment. The new image has been pushed to docker hub . The bitbucket pipelines run successfully. Don't forget to update your repository variable for the install4j license.
                Hide
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                pbadzuh Philip Badzuh (Inactive) added a comment - - edited
                • I have updated the docker compose documentation to include debugging tips such as how to interact with a running docker container.
                • I have also brought back the igb_7.install4j configuration file for reference and for use with older releases. Note that install4j licenses are specific to major releases of install4j.
                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - - edited I have updated the docker compose documentation to include debugging tips such as how to interact with a running docker container. I have also brought back the igb_7.install4j configuration file for reference and for use with older releases. Note that install4j licenses are specific to major releases of install4j.
                Hide
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                ann.loraine Ann Loraine added a comment -

                A request:

                • Please change the name of newly added file distribution/igb_8.install4j to distribution/install4jv8_config.xml
                Show
                ann.loraine Ann Loraine added a comment - A request: Please change the name of newly added file distribution/igb_8.install4j to distribution/install4jv8_config.xml
                Hide
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                pbadzuh Philip Badzuh (Inactive) added a comment -

                Sure, I have updated my branch to include that change:
                https://bitbucket.org/pbadzuh/igb_pbdev/branch/IGBF-2569#diff

                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - Sure, I have updated my branch to include that change: https://bitbucket.org/pbadzuh/igb_pbdev/branch/IGBF-2569#diff
                Hide
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                ann.loraine Ann Loraine added a comment -

                Thank you! Please submit a PR when ready.

                Show
                ann.loraine Ann Loraine added a comment - Thank you! Please submit a PR when ready.
                Hide
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                pbadzuh Philip Badzuh (Inactive) added a comment -

                Please see my PRs below:

                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - Please see my PRs below: https://bitbucket.org/lorainelab/integrated-genome-browser-docker/pull-requests/6/igbf-2569-update-install4j-to-v8/diff https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/844/igbf-2569/diff
                Hide
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                ann.loraine Ann Loraine added a comment -

                Both are now merged.

                Still to-do: Modify team repository to use the new information for Install4J.

                Show
                ann.loraine Ann Loraine added a comment - Both are now merged. Still to-do: Modify team repository to use the new information for Install4J.
                Hide
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                noor91zahara Noor Zahara (Inactive) added a comment -

                I pulled the latest changes into my master branch and changed the install 4j license password.
                After the pipeline ran successfully, only .jar file got created under downloads section.

                Philip Badzuh - Is there something I am missing?

                Show
                noor91zahara Noor Zahara (Inactive) added a comment - I pulled the latest changes into my master branch and changed the install 4j license password. After the pipeline ran successfully, only .jar file got created under downloads section. Philip Badzuh - Is there something I am missing?
                Hide
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                pbadzuh Philip Badzuh (Inactive) added a comment -

                Noor Zahara, which pipeline did you run? If you ran the 'default' pipeline, that one only outputs a jar file. Try running the 'IGBF-*' pipeline, if you haven't already.

                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - Noor Zahara , which pipeline did you run? If you ran the 'default' pipeline, that one only outputs a jar file. Try running the 'IGBF-*' pipeline, if you haven't already.
                Hide
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                noor91zahara Noor Zahara (Inactive) added a comment -

                I guess I had previously tried running default.

                Working as expected.

                Show
                noor91zahara Noor Zahara (Inactive) added a comment - I guess I had previously tried running default. Working as expected.

                  People

                  • Assignee:
                    pbadzuh Philip Badzuh (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: