Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:

      Description

      Situation: The Show Console menu option is failing to open the console/log and causing a null pointer exception.

      Task: Fix the Show Console menu option so that the console/log appears correctly.

      Note: This issue seems to be due to changes made in IGBF-2550 to change the name of the Console tab to Log.

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            Activity

            Hide
            nfreese Nowlan Freese added a comment -

            To replicate in IGB:
            Select Help > Show Console

            Show
            nfreese Nowlan Freese added a comment - To replicate in IGB: Select Help > Show Console
            Hide
            nfreese Nowlan Freese added a comment -

            15:08:49.279 ERROR com.affymetrix.igb.IGB - com.affymetrix.igb.IGB.getView() failed for "Console"
            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at java.util.concurrent.ConcurrentHashMap.get(ConcurrentHashMap.java:936)
            at com.affymetrix.igb.window.service.def.WindowServiceDefaultImpl.setTabMenu(WindowServiceDefaultImpl.java:288)
            at com.affymetrix.igb.window.service.def.WindowServiceDefaultImpl.setTabStateAndMenu(WindowServiceDefaultImpl.java:342)
            at com.affymetrix.igb.action.ShowConsoleAction.actionPerformed(ShowConsoleAction.java:46)
            at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
            at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
            at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
            at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
            at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
            at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:842)
            at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
            at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:886)
            at java.awt.Component.processMouseEvent(Component.java:6539)
            at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
            at java.awt.Component.processEvent(Component.java:6304)
            at java.awt.Container.processEvent(Container.java:2239)
            at java.awt.Component.dispatchEventImpl(Component.java:4889)
            at java.awt.Container.dispatchEventImpl(Container.java:2297)
            at java.awt.Component.dispatchEvent(Component.java:4711)
            at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
            at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
            at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
            at java.awt.Container.dispatchEventImpl(Container.java:2283)
            at java.awt.Window.dispatchEventImpl(Window.java:2746)
            at java.awt.Component.dispatchEvent(Component.java:4711)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
            at java.awt.EventQueue.access$500(EventQueue.java:97)
            at java.awt.EventQueue$3.run(EventQueue.java:709)
            at java.awt.EventQueue$3.run(EventQueue.java:703)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
            at java.awt.EventQueue$4.run(EventQueue.java:733)
            at java.awt.EventQueue$4.run(EventQueue.java:731)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

            Show
            nfreese Nowlan Freese added a comment - 15:08:49.279 ERROR com.affymetrix.igb.IGB - com.affymetrix.igb.IGB.getView() failed for "Console" Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at java.util.concurrent.ConcurrentHashMap.get(ConcurrentHashMap.java:936) at com.affymetrix.igb.window.service.def.WindowServiceDefaultImpl.setTabMenu(WindowServiceDefaultImpl.java:288) at com.affymetrix.igb.window.service.def.WindowServiceDefaultImpl.setTabStateAndMenu(WindowServiceDefaultImpl.java:342) at com.affymetrix.igb.action.ShowConsoleAction.actionPerformed(ShowConsoleAction.java:46) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) at javax.swing.AbstractButton.doClick(AbstractButton.java:376) at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:842) at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157) at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:886) at java.awt.Component.processMouseEvent(Component.java:6539) at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) at java.awt.Component.processEvent(Component.java:6304) at java.awt.Container.processEvent(Container.java:2239) at java.awt.Component.dispatchEventImpl(Component.java:4889) at java.awt.Container.dispatchEventImpl(Container.java:2297) at java.awt.Component.dispatchEvent(Component.java:4711) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476) at java.awt.Container.dispatchEventImpl(Container.java:2283) at java.awt.Window.dispatchEventImpl(Window.java:2746) at java.awt.Component.dispatchEvent(Component.java:4711) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760) at java.awt.EventQueue.access$500(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:709) at java.awt.EventQueue$3.run(EventQueue.java:703) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84) at java.awt.EventQueue$4.run(EventQueue.java:733) at java.awt.EventQueue$4.run(EventQueue.java:731) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) at java.awt.EventQueue.dispatchEvent(EventQueue.java:730) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
            Hide
            ann.loraine Ann Loraine added a comment -

            Console was renamed "Log" with https://jira.transvar.org/browse/IGBF-2550.

            Show
            ann.loraine Ann Loraine added a comment - Console was renamed "Log" with https://jira.transvar.org/browse/IGBF-2550 .
            Hide
            ssegu Sai Supreeth Segu (Inactive) added a comment -
            Show
            ssegu Sai Supreeth Segu (Inactive) added a comment - I have fixed this issue. Please review it. Link for the commit: https://bitbucket.org/supreeth27/integrated-genome-browser/commits/0619efdd1b10bb0854bac3b6324a03a14beab842
            Show
            ssegu Sai Supreeth Segu (Inactive) added a comment - Link for the pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/843/igbf-2584-fix-show-console-menu-option
            Hide
            noor91zahara Noor Zahara (Inactive) added a comment -

            Working as expected.

            Show
            noor91zahara Noor Zahara (Inactive) added a comment - Working as expected.

              People

              • Assignee:
                ssegu Sai Supreeth Segu (Inactive)
                Reporter:
                nfreese Nowlan Freese
              • Votes:
                0 Vote for this issue
                Watchers:
                4 Start watching this issue

                Dates

                • Created:
                  Updated:
                  Resolved: