Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-2584

Fix Show Console menu option

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          Situation: The Show Console menu option is failing to open the console/log and causing a null pointer exception.

          Task: Fix the Show Console menu option so that the console/log appears correctly.

          Note: This issue seems to be due to changes made in IGBF-2550 to change the name of the Console tab to Log.

            Attachments

              Issue Links

              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-2550 Rename IGB Console tab

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1765 [ 17855 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2550 [ IGBF-2550 ]
                nfreese Nowlan Freese made changes -
                Summary Fix Fix Show Console menu option
                Hide
                Permalink
                nfreese Nowlan Freese added a comment -

                To replicate in IGB:
                Select Help > Show Console

                Show
                nfreese Nowlan Freese added a comment - To replicate in IGB: Select Help > Show Console
                nfreese Nowlan Freese made changes -
                Description Situation: The Show Console menu option is failing to open the console/log and causing a null pointer exception.

                Task: Fix the Show Console menu option so that the console/log appears correctly.

                Note: This issue seems to be due to changes made in IGBF-2550 to change the name of the Console tab to Log.

                15:08:49.279 ERROR com.affymetrix.igb.IGB - com.affymetrix.igb.IGB.getView() failed for "Console"
                Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
                at java.util.concurrent.ConcurrentHashMap.get(ConcurrentHashMap.java:936)
                at com.affymetrix.igb.window.service.def.WindowServiceDefaultImpl.setTabMenu(WindowServiceDefaultImpl.java:288)
                at com.affymetrix.igb.window.service.def.WindowServiceDefaultImpl.setTabStateAndMenu(WindowServiceDefaultImpl.java:342)
                at com.affymetrix.igb.action.ShowConsoleAction.actionPerformed(ShowConsoleAction.java:46)
                at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
                at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
                at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
                at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
                at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
                at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:842)
                at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
                at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:886)
                at java.awt.Component.processMouseEvent(Component.java:6539)
                at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
                at java.awt.Component.processEvent(Component.java:6304)
                at java.awt.Container.processEvent(Container.java:2239)
                at java.awt.Component.dispatchEventImpl(Component.java:4889)
                at java.awt.Container.dispatchEventImpl(Container.java:2297)
                at java.awt.Component.dispatchEvent(Component.java:4711)
                at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
                at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
                at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
                at java.awt.Container.dispatchEventImpl(Container.java:2283)
                at java.awt.Window.dispatchEventImpl(Window.java:2746)
                at java.awt.Component.dispatchEvent(Component.java:4711)
                at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
                at java.awt.EventQueue.access$500(EventQueue.java:97)
                at java.awt.EventQueue$3.run(EventQueue.java:709)
                at java.awt.EventQueue$3.run(EventQueue.java:703)
                at java.security.AccessController.doPrivileged(Native Method)
                at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
                at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
                at java.awt.EventQueue$4.run(EventQueue.java:733)
                at java.awt.EventQueue$4.run(EventQueue.java:731)
                at java.security.AccessController.doPrivileged(Native Method)
                at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
                at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
                at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
                at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
                at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
                at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
                at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
                at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
                		Situation: The Show Console menu option is failing to open the console/log and causing a null pointer exception.

                Task: Fix the Show Console menu option so that the console/log appears correctly.

                Note: This issue seems to be due to changes made in IGBF-2550 to change the name of the Console tab to Log.
                Hide
                Permalink
                nfreese Nowlan Freese added a comment -

                15:08:49.279 ERROR com.affymetrix.igb.IGB - com.affymetrix.igb.IGB.getView() failed for "Console"
                Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
                at java.util.concurrent.ConcurrentHashMap.get(ConcurrentHashMap.java:936)
                at com.affymetrix.igb.window.service.def.WindowServiceDefaultImpl.setTabMenu(WindowServiceDefaultImpl.java:288)
                at com.affymetrix.igb.window.service.def.WindowServiceDefaultImpl.setTabStateAndMenu(WindowServiceDefaultImpl.java:342)
                at com.affymetrix.igb.action.ShowConsoleAction.actionPerformed(ShowConsoleAction.java:46)
                at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
                at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
                at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
                at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
                at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
                at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:842)
                at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
                at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:886)
                at java.awt.Component.processMouseEvent(Component.java:6539)
                at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
                at java.awt.Component.processEvent(Component.java:6304)
                at java.awt.Container.processEvent(Container.java:2239)
                at java.awt.Component.dispatchEventImpl(Component.java:4889)
                at java.awt.Container.dispatchEventImpl(Container.java:2297)
                at java.awt.Component.dispatchEvent(Component.java:4711)
                at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904)
                at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535)
                at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476)
                at java.awt.Container.dispatchEventImpl(Container.java:2283)
                at java.awt.Window.dispatchEventImpl(Window.java:2746)
                at java.awt.Component.dispatchEvent(Component.java:4711)
                at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
                at java.awt.EventQueue.access$500(EventQueue.java:97)
                at java.awt.EventQueue$3.run(EventQueue.java:709)
                at java.awt.EventQueue$3.run(EventQueue.java:703)
                at java.security.AccessController.doPrivileged(Native Method)
                at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
                at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
                at java.awt.EventQueue$4.run(EventQueue.java:733)
                at java.awt.EventQueue$4.run(EventQueue.java:731)
                at java.security.AccessController.doPrivileged(Native Method)
                at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
                at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
                at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
                at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
                at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
                at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
                at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
                at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

                Show
                nfreese Nowlan Freese added a comment - 15:08:49.279 ERROR com.affymetrix.igb.IGB - com.affymetrix.igb.IGB.getView() failed for "Console" Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at java.util.concurrent.ConcurrentHashMap.get(ConcurrentHashMap.java:936) at com.affymetrix.igb.window.service.def.WindowServiceDefaultImpl.setTabMenu(WindowServiceDefaultImpl.java:288) at com.affymetrix.igb.window.service.def.WindowServiceDefaultImpl.setTabStateAndMenu(WindowServiceDefaultImpl.java:342) at com.affymetrix.igb.action.ShowConsoleAction.actionPerformed(ShowConsoleAction.java:46) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) at javax.swing.AbstractButton.doClick(AbstractButton.java:376) at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:842) at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157) at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:886) at java.awt.Component.processMouseEvent(Component.java:6539) at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) at java.awt.Component.processEvent(Component.java:6304) at java.awt.Container.processEvent(Container.java:2239) at java.awt.Component.dispatchEventImpl(Component.java:4889) at java.awt.Container.dispatchEventImpl(Container.java:2297) at java.awt.Component.dispatchEvent(Component.java:4711) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476) at java.awt.Container.dispatchEventImpl(Container.java:2283) at java.awt.Window.dispatchEventImpl(Window.java:2746) at java.awt.Component.dispatchEvent(Component.java:4711) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760) at java.awt.EventQueue.access$500(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:709) at java.awt.EventQueue$3.run(EventQueue.java:703) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84) at java.awt.EventQueue$4.run(EventQueue.java:733) at java.awt.EventQueue$4.run(EventQueue.java:731) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) at java.awt.EventQueue.dispatchEvent(EventQueue.java:730) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                Console was renamed "Log" with https://jira.transvar.org/browse/IGBF-2550.

                Show
                ann.loraine Ann Loraine added a comment - Console was renamed "Log" with https://jira.transvar.org/browse/IGBF-2550 .
                ann.loraine Ann Loraine made changes -
                Labels Beginner
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ssegu Sai Supreeth Segu (Inactive) made changes -
                Assignee Sai Supreeth Segu [ ssegu ]
                ssegu Sai Supreeth Segu (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Hide
                Permalink
                ssegu Sai Supreeth Segu (Inactive) added a comment -

                I have fixed this issue. Please review it.
                Link for the commit: https://bitbucket.org/supreeth27/integrated-genome-browser/commits/0619efdd1b10bb0854bac3b6324a03a14beab842

                Show
                ssegu Sai Supreeth Segu (Inactive) added a comment - I have fixed this issue. Please review it. Link for the commit: https://bitbucket.org/supreeth27/integrated-genome-browser/commits/0619efdd1b10bb0854bac3b6324a03a14beab842
                ssegu Sai Supreeth Segu (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ssegu Sai Supreeth Segu (Inactive) made changes -
                Assignee Sai Supreeth Segu [ ssegu ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Assignee Sai Supreeth Segu [ ssegu ]
                Hide
                Permalink
                ssegu Sai Supreeth Segu (Inactive) added a comment -

                Link for the pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/843/igbf-2584-fix-show-console-menu-option

                Show
                ssegu Sai Supreeth Segu (Inactive) added a comment - Link for the pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/843/igbf-2584-fix-show-console-menu-option
                ssegu Sai Supreeth Segu (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                ssegu Sai Supreeth Segu (Inactive) made changes -
                Assignee Sai Supreeth Segu [ ssegu ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                noor91zahara Noor Zahara (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                noor91zahara Noor Zahara (Inactive) made changes -
                Assignee Noor Zahara [ noor91zahara ]
                Hide
                Permalink
                noor91zahara Noor Zahara (Inactive) added a comment -

                Working as expected.

                Show
                noor91zahara Noor Zahara (Inactive) added a comment - Working as expected.
                noor91zahara Noor Zahara (Inactive) made changes -
                Assignee Noor Zahara [ noor91zahara ] Sai Supreeth Segu [ ssegu ]
                noor91zahara Noor Zahara (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                  People

                  • Assignee:
                    ssegu Sai Supreeth Segu (Inactive)
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: