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  1. IGB
  2. IGBF-2623

Test ProtAnnot Subsystem - Linux

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Attachments

            Issue Links

            relates to

            Task - A task that needs to be done. IGBF-2656 Fix problems with ProtAnnot

            • Major - Major loss of function.
            • Closed

            Task - A task that needs to be done. IGBF-2621 Test ProtAnnot Subsystem - MacOS

            • Major - Major loss of function.
            • Closed

            Task - A task that needs to be done. IGBF-2622 Test ProtAnnot Subsystem - Windows

            • Major - Major loss of function.
            • Closed

              Activity

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              ann.loraine Ann Loraine created issue -
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Epic Link IGBF-2593 [ 18777 ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-2622 [ IGBF-2622 ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-2621 [ IGBF-2621 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              nfreese Nowlan Freese made changes -
              Assignee Nowlan Freese [ nfreese ]
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              nfreese Nowlan Freese added a comment -

              Interproscan about page has changed to http://www.ebi.ac.uk/interpro/about/interpro/

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              nfreese Nowlan Freese added a comment - Interproscan about page has changed to http://www.ebi.ac.uk/interpro/about/interpro/
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              nfreese Nowlan Freese added a comment -

              Getting the following exception error/exception in both 9.1.4 and 9.1.6:

              16:36:51.913 ERROR o.l.i.p.i.InterProscanServiceRest - Server returned HTTP response code: 400 for URL: http://www.ebi.ac.uk/Tools/services/rest/iprscan5/run
              java.io.IOException: Server returned HTTP response code: 400 for URL: http://www.ebi.ac.uk/Tools/services/rest/iprscan5/run

              Show
              nfreese Nowlan Freese added a comment - Getting the following exception error/exception in both 9.1.4 and 9.1.6: 16:36:51.913 ERROR o.l.i.p.i.InterProscanServiceRest - Server returned HTTP response code: 400 for URL: http://www.ebi.ac.uk/Tools/services/rest/iprscan5/run java.io.IOException: Server returned HTTP response code: 400 for URL: http://www.ebi.ac.uk/Tools/services/rest/iprscan5/run
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              nfreese Nowlan Freese added a comment -

              Tested on Fedora 27 GNOME 3.26.2

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              nfreese Nowlan Freese added a comment - Tested on Fedora 27 GNOME 3.26.2
              nfreese Nowlan Freese made changes -
              Assignee Nowlan Freese [ nfreese ]
              nfreese Nowlan Freese made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
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              nfreese Nowlan Freese added a comment -

              There seems to be an issue (present in 9.1.4 and 9.1.6) where interproscan skips gene models randomly. Running interproscan multiple times will yield variable results in terms of which and how many models return results. Some are marked as failing, while others do not appear to have been run at all.

              Show
              nfreese Nowlan Freese added a comment - There seems to be an issue (present in 9.1.4 and 9.1.6) where interproscan skips gene models randomly. Running interproscan multiple times will yield variable results in terms of which and how many models return results. Some are marked as failing, while others do not appear to have been run at all.
              nfreese Nowlan Freese made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              nfreese Nowlan Freese made changes -
              Assignee Sai Supreeth Segu [ ssegu ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-2656 [ IGBF-2656 ]
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              ssegu Sai Supreeth Segu (Inactive) added a comment -

              Unable to reproduce the error.

              Show
              ssegu Sai Supreeth Segu (Inactive) added a comment - Unable to reproduce the error.
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Assignee Sai Supreeth Segu [ ssegu ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Sprint Fall 5 Nov 9 - Nov 20 [ 108 ] Fall 5 Nov 9 - Nov 20, Fall 6 Nov 23 - Dec 4 [ 108, 109 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Assignee Sai Supreeth Segu [ ssegu ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Assignee Sai Supreeth Segu [ ssegu ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Assignee Sai Supreeth Segu [ ssegu ]
              Hide
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              ssegu Sai Supreeth Segu (Inactive) added a comment -

              Everything looks good. Closing the ticket.

              Show
              ssegu Sai Supreeth Segu (Inactive) added a comment - Everything looks good. Closing the ticket.
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              ssegu Sai Supreeth Segu (Inactive) added a comment -

              Had a conversion with Dr. Nowlan Freese, the issue was not replicated consistently. So I haven't labeled it as OldBug

              Show
              ssegu Sai Supreeth Segu (Inactive) added a comment - Had a conversion with Dr. Nowlan Freese , the issue was not replicated consistently. So I haven't labeled it as OldBug
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Assignee Sai Supreeth Segu [ ssegu ] Nowlan Freese [ nfreese ]

                People

                • Assignee:
                  nfreese Nowlan Freese
                  Reporter:
                  ann.loraine Ann Loraine
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  3 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: