Details
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Type:
Bug
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Status: To-Do (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11, Fall 7 Dec 14 - Dec 23, Winter 1 Dec 28 - Jan 8, Winter 2 Jan 11 - Jan 22, Winter 3 Jan 25 - Feb 5, Winter 4 Feb 8 - Feb 19, Winter 6 Mar 8 - Mar 19, Spring 4 2021 May 3 - May 14
Description
Situation: The Depth Graph (Soft-clip All) track operation on PacBio data is providing incorrect results.
To replicate:
Load the H_sapiens_Dec_2013 genome.
Add the attached sonAshMinimap2_1LINE.bam file.
Navigate to chr1:10,643,151-10,643,319
Click load data.
Right-click on the bam file track label and select Track Operations > Depth Graph (Soft-clip All).
Note that there is one soft clip at the beginning of the read, but the graph states there are approximately 800 soft clips.
Task: Fix the Depth Graph (Soft-clip All) operator so that it displays the correct soft-clip depth information for PacBio files.
